This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kcb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:16, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of a NO-forming Nitrite Reductase Mutant: an Analog of a Transition State in Enzymatic Reaction==
==Crystal Structure of a NO-forming Nitrite Reductase Mutant: an Analog of a Transition State in Enzymatic Reaction==
-
<StructureSection load='1kcb' size='340' side='right' caption='[[1kcb]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='1kcb' size='340' side='right'caption='[[1kcb]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1kcb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_cycloclastes"_(gray_and_thornton)_bergey_et_al. "achromobacter cycloclastes" (gray and thornton) bergey et al.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KCB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KCB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1kcb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KCB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KCB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kcb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kcb OCA], [http://pdbe.org/1kcb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kcb RCSB], [http://www.ebi.ac.uk/pdbsum/1kcb PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kcb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kcb OCA], [https://pdbe.org/1kcb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kcb RCSB], [https://www.ebi.ac.uk/pdbsum/1kcb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kcb ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIR_ACHCY NIR_ACHCY]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kc/1kcb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kc/1kcb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 31:
==See Also==
==See Also==
-
*[[Nitric reductase|Nitric reductase]]
+
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chang, T]]
+
[[Category: Achromobacter cycloclastes]]
-
[[Category: Chang, W C]]
+
[[Category: Large Structures]]
-
[[Category: Chang, W R]]
+
[[Category: Chang T]]
-
[[Category: LeGall, J]]
+
[[Category: Chang WC]]
-
[[Category: Liang, D C]]
+
[[Category: Chang WR]]
-
[[Category: Liu, M Y]]
+
[[Category: LeGall J]]
-
[[Category: Liu, S Q]]
+
[[Category: Liang DC]]
-
[[Category: Zhang, J P]]
+
[[Category: Liu MY]]
-
[[Category: Beta barrel]]
+
[[Category: Liu SQ]]
-
[[Category: Copper-containing nitrite reductase]]
+
[[Category: Zhang JP]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of a NO-forming Nitrite Reductase Mutant: an Analog of a Transition State in Enzymatic Reaction

PDB ID 1kcb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kcb"
Personal tools