3koj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:01, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==
==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==
-
<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3koj' size='340' side='right'caption='[[3koj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_6301 Synechococcus elongatus PCC 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.895&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://pdbe.org/3koj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [https://pdbe.org/3koj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [https://www.ebi.ac.uk/pdbsum/3koj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3koj ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0H3K9J4_SYNP6 A0A0H3K9J4_SYNP6]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 19: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Anacystis nidulans]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Synechococcus elongatus PCC 6301]]
-
[[Category: Ciccosanti, C]]
+
[[Category: Acton TB]]
-
[[Category: Foote, L E]]
+
[[Category: Ciccosanti C]]
-
[[Category: Hunt, J F]]
+
[[Category: Foote LE]]
-
[[Category: Janjua, H]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Janjua H]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M]]
+
[[Category: Su M]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S]]
+
[[Category: Vorobiev S]]
-
[[Category: Wang, H]]
+
[[Category: Wang H]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Dna binding protein]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Nesg]]
+
-
[[Category: Pf00436]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Single-strand binding protein family]]
+
-
[[Category: Snr59a]]
+

Current revision

Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.

PDB ID 3koj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools