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2a51

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Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest

Structural highlights

2a51 is a 1 chain structure with sequence from Simian immunodeficiency virus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9Q0A3_SIV

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The NCps (nucleocapsid proteins) of HIV-1 (HIV type 1), HIV-2 and SIV (simian immunodeficiency virus) are small highly basic proteins, characterized by the presence of two CCHC ZF (zinc finger) domains. NCps, closely associated with the dimeric RNA genome in the core of the virus particle, were shown to promote the specific encapsidation of the viral RNA and are implicated in reverse transcription. Solution structure of the HIV-1 NCp7 and complexes of NCp7 with RNA or DNA showed the critical relationships between the structure and its various functions. HIV-1 and HIV-2 have resulted respectively from transmissions of SIV from chimpanzees and sooty mangabeys. It has been shown that the SIVlhoest (SIV from l'Hoest monkeys) also has the potential to infect human populations. Since monkeys are of great interest for clinical studies of antiviral drugs, the structure of (13-51)NCp8 (zinc finger domain of NCp8, encompassing residues 13-51) from SIVlhoest was determined by NMR to appraise the influence of major differences in the sequence, since Glu21, Gly43 and Met46 in NCp7 are replaced by Pro, Glu and Phe respectively in this particular NCp8. The structure of (13-51)NCp8 is very well defined, and surprisingly the structure of each ZF is similar in NCp7 and NCp8. Moreover, contrary to NCp7, the two ZFs are strongly locked to each other in this NCp8. This first reported structure of a simian NCp8 compared with that of NCp7 shows that the main structural differences occur at the flexible linker between the two ZFs but the essential residues responsible for the interaction with oligonucleotides adopt the same orientation in the two proteins.

Structure of the zinc finger domain encompassing residues 13-51 of the nucleocapsid protein from simian immunodeficiency virus.,Morellet N, Meudal H, Bouaziz S, Roques BP Biochem J. 2006 Feb 1;393(Pt 3):725-32. PMID:16229684^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Morellet N, Meudal H, Bouaziz S, Roques BP. Structure of the zinc finger domain encompassing residues 13-51 of the nucleocapsid protein from simian immunodeficiency virus. Biochem J. 2006 Feb 1;393(Pt 3):725-32. PMID:16229684 doi:10.1042/BJ20051203

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2a51"

@@ Line 1: / Line 1: @@
 ==Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest==
-<StructureSection load='2a51' size='340' side='right' caption='[[2a51]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2a51' size='340' side='right'caption='[[2a51]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2a51]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A51 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A51 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2a51]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Simian_immunodeficiency_virus Simian immunodeficiency virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A51 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A51 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a51 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a51 OCA], [http://pdbe.org/2a51 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a51 RCSB], [http://www.ebi.ac.uk/pdbsum/2a51 PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a51 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a51 OCA], [https://pdbe.org/2a51 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a51 RCSB], [https://www.ebi.ac.uk/pdbsum/2a51 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a51 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9Q0A3_SIV Q9Q0A3_SIV]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/2a51_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/2a51_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 29: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Bouaziz, S]]
+[[Category: Large Structures]]
-[[Category: Meudal, H]]
+[[Category: Simian immunodeficiency virus]]
-[[Category: Morellet, N]]
+[[Category: Bouaziz S]]
-[[Category: Roques, B P]]
+[[Category: Meudal H]]
-[[Category: Metal binding protein]]
+[[Category: Morellet N]]
-[[Category: Ncp8]]
+[[Category: Roques BP]]
-[[Category: Nucleocapsid]]
-[[Category: Sivlhoest]]
-[[Category: Viral protein]]

2a51

From Proteopedia

Current revision

Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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