This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e99

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:33, 1 February 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the beta subunit of the benzoate 1,2-dioxygenase (benb, bmaa0186) from burkholderia mallei atcc 23344 at 1.90 A resolution==
==Crystal structure of the beta subunit of the benzoate 1,2-dioxygenase (benb, bmaa0186) from burkholderia mallei atcc 23344 at 1.90 A resolution==
-
<StructureSection load='3e99' size='340' side='right' caption='[[3e99]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3e99' size='340' side='right'caption='[[3e99]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3e99]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Burma Burma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E99 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E99 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3e99]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_mallei_ATCC_23344 Burkholderia mallei ATCC 23344]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E99 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e99 OCA], [https://pdbe.org/3e99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e99 RCSB], [https://www.ebi.ac.uk/pdbsum/3e99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e99 ProSAT], [https://www.topsan.org/Proteins/JCSG/3e99 TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_105014.1, benB, BMAA0186 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243160 BURMA])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Benzoate_1,2-dioxygenase Benzoate 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.12.10 1.14.12.10] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e99 OCA], [http://pdbe.org/3e99 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e99 RCSB], [http://www.ebi.ac.uk/pdbsum/3e99 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e99 TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0H2WBM4_BURMA A0A0H2WBM4_BURMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/3e99_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/3e99_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Benzoate 1,2-dioxygenase]]
+
[[Category: Burkholderia mallei ATCC 23344]]
-
[[Category: Burma]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
-
[[Category: Jcsg]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of the beta subunit of the benzoate 1,2-dioxygenase (benb, bmaa0186) from burkholderia mallei atcc 23344 at 1.90 A resolution

PDB ID 3e99

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools