This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3edk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:20, 29 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structural base for cyclodextrin hydrolysis==
==Structural base for cyclodextrin hydrolysis==
-
<StructureSection load='3edk' size='340' side='right' caption='[[3edk]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
+
<StructureSection load='3edk' size='340' side='right'caption='[[3edk]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3edk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavobacterium_sp._92 Flavobacterium sp. 92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EDK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3edk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacterium_sp._92 Flavobacterium sp. 92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EDK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CE8:CELLOOCTAOSE'>CE8</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3edd|3edd]], [[3ede|3ede]], [[3edf|3edf]], [[3edj|3edj]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRD_900042:gamma-cyclodextrin'>PRD_900042</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cdase ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197856 Flavobacterium sp. 92])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3edk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3edk OCA], [https://pdbe.org/3edk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3edk RCSB], [https://www.ebi.ac.uk/pdbsum/3edk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3edk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cyclomaltodextrinase Cyclomaltodextrinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.54 3.2.1.54] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3edk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3edk OCA], [http://pdbe.org/3edk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3edk RCSB], [http://www.ebi.ac.uk/pdbsum/3edk PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8KKG0_9FLAO Q8KKG0_9FLAO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/3edk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/3edk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cyclomaltodextrinase]]
 
[[Category: Flavobacterium sp. 92]]
[[Category: Flavobacterium sp. 92]]
-
[[Category: Buedenbender, S]]
+
[[Category: Large Structures]]
-
[[Category: Schulz, G E]]
+
[[Category: Buedenbender S]]
-
[[Category: Gamma-cyclodextrin complex]]
+
[[Category: Schulz GE]]
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Structural base for cyclodextrin hydrolysis

PDB ID 3edk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3edk"
Personal tools