2r80

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Pigeon Hemoglobin (OXY form)==
==Pigeon Hemoglobin (OXY form)==
-
<StructureSection load='2r80' size='340' side='right' caption='[[2r80]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
+
<StructureSection load='2r80' size='340' side='right'caption='[[2r80]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2r80]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Columba_livia Columba livia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R80 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2R80 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2r80]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Columba_livia Columba livia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R80 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R80 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r80 OCA], [http://pdbe.org/2r80 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2r80 RCSB], [http://www.ebi.ac.uk/pdbsum/2r80 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r80 OCA], [https://pdbe.org/2r80 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r80 RCSB], [https://www.ebi.ac.uk/pdbsum/2r80 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r80 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HBA_COLLI HBA_COLLI]] Involved in oxygen transport from the lung to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB_COLLI HBB_COLLI]] Involved in oxygen transport from the lung to the various peripheral tissues.
+
[https://www.uniprot.org/uniprot/HBA_COLLI HBA_COLLI] Involved in oxygen transport from the lung to the various peripheral tissues.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r80_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r80_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 24: Line 26:
</StructureSection>
</StructureSection>
[[Category: Columba livia]]
[[Category: Columba livia]]
-
[[Category: Heinemann, U]]
+
[[Category: Large Structures]]
-
[[Category: Muller, J J]]
+
[[Category: Heinemann U]]
-
[[Category: Neelagandan, K]]
+
[[Category: Muller JJ]]
-
[[Category: Packianathan, C]]
+
[[Category: Neelagandan K]]
-
[[Category: Palani, K]]
+
[[Category: Packianathan C]]
-
[[Category: Ponnuswamy, M N]]
+
[[Category: Palani K]]
-
[[Category: Sundaresan, S]]
+
[[Category: Ponnuswamy MN]]
-
[[Category: Heme]]
+
[[Category: Sundaresan S]]
-
[[Category: Iron]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxygen binding]]
+
-
[[Category: Oxygen tranport/storage]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Transport]]
+

Current revision

Pigeon Hemoglobin (OXY form)

PDB ID 2r80

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools