5cty

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==Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment==
==Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment==
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<StructureSection load='5cty' size='340' side='right' caption='[[5cty]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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<StructureSection load='5cty' size='340' side='right'caption='[[5cty]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5cty]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CTY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CTY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5cty]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CTY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CTY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=55H:3-[2-(PYRIDIN-3-YL)-1,3-THIAZOL-5-YL]-2,7-DIHYDRO-6H-PYRAZOLO[3,4-B]PYRIDIN-6-ONE'>55H</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cph|5cph]], [[5ctu|5ctu]], [[5ctw|5ctw]], [[5ctx|5ctx]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=55H:3-[2-(PYRIDIN-3-YL)-1,3-THIAZOL-5-YL]-2,7-DIHYDRO-6H-PYRAZOLO[3,4-B]PYRIDIN-6-ONE'>55H</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cty OCA], [https://pdbe.org/5cty PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cty RCSB], [https://www.ebi.ac.uk/pdbsum/5cty PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cty ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cty OCA], [http://pdbe.org/5cty PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cty RCSB], [http://www.ebi.ac.uk/pdbsum/5cty PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GYRB_STAAU GYRB_STAAU]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01898]
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[https://www.uniprot.org/uniprot/GYRB_STAAU GYRB_STAAU] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01898]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5cty" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5cty" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Gyrase 3D Structures|Gyrase 3D Structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Andersen, O A]]
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[[Category: Large Structures]]
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[[Category: Barker, J]]
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[[Category: Staphylococcus aureus]]
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[[Category: Cheng, R K]]
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[[Category: Andersen OA]]
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[[Category: Cross, J B]]
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[[Category: Barker J]]
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[[Category: Felicetti, B]]
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[[Category: Cheng RK]]
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[[Category: Kahmann, J]]
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[[Category: Cross JB]]
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[[Category: Lippa, B]]
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[[Category: Felicetti B]]
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[[Category: Mesleh, M]]
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[[Category: Kahmann J]]
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[[Category: Ryan, M D]]
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[[Category: Lippa B]]
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[[Category: Scheich, C]]
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[[Category: Mesleh M]]
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[[Category: Wood, M]]
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[[Category: Ryan MD]]
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[[Category: Yang, Q]]
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[[Category: Scheich C]]
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[[Category: Zhang, J]]
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[[Category: Wood M]]
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[[Category: Dna gyrase]]
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[[Category: Yang Q]]
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[[Category: Fragment-based screening]]
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[[Category: Zhang J]]
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[[Category: Gyrb]]
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[[Category: Isomerase-isomerase inhibitor complex]]
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[[Category: Structure-based design]]
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Current revision

Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment

PDB ID 5cty

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