5i77

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5i77 is ON HOLD until Feb 17 2018
+
==Crystal structure of a beta-1,4-endoglucanase from Aspergillus niger==
 +
<StructureSection load='5i77' size='340' side='right'caption='[[5i77]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5i77]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I77 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i77 OCA], [https://pdbe.org/5i77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i77 RCSB], [https://www.ebi.ac.uk/pdbsum/5i77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i77 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/EGLB_ASPNG EGLB_ASPNG] Has endoglucanase activity on substrates containing beta-1,4 glycosidic bonds, like in carboxymethylcellulose (CMC), hydroxyethylcellulose (HEC) and beta-glucan. Involved in the degradation of complex natural cellulosic substrates.<ref>PMID:16233124</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Eukaryotic 1,4-beta-endoglucanases (EC 3.2.1.4) have shown great potentials in many commercial applications because they effectively catalyze hydrolysis of cellulose, the main component of the plant cell wall. Here we expressed a glycoside hydrolase family (GH) 5 1,4-beta-endoglucanase from Aspergillus niger (AnCel5A) in Pichia pastoris, which exhibits outstanding pH and heat stability. In order to further investigate the molecular mechanism of AnCel5A, apo-form and cellotetraose (CTT) complex enzyme crystal structures were solved to high resolution. AnCel5A folds into a typical (beta/alpha)8-TIM barrel architecture, resembling other GH5 members. In the substrate binding cavity, CTT is found to bind to -4 - -1 subsites, and several polyethylene glycol molecules are found in positive subsites. In addition, several unique N-glycosylation motifs that may contribute to protein higher stability were observed from crystal structures. These results are of great importance for understanding the molecular mechanism of AnCel5A, and also provide guidance for further applications of the enzyme.
-
Authors: Li, Y.J., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.
+
Functional and structural analysis of Pichia pastoris-expressed Aspergillus niger 1,4-beta-endoglucanase.,Yan J, Liu W, Li Y, Lai HL, Zheng Y, Huang JW, Chen CC, Chen Y, Jin J, Li H, Guo RT Biochem Biophys Res Commun. 2016 Jun 17;475(1):8-12. doi:, 10.1016/j.bbrc.2016.05.012. Epub 2016 May 3. PMID:27154222<ref>PMID:27154222</ref>
-
Description: Crystal structure of a beta-1,4-endoglucanase from Aspergillus niger
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Li, Y.J]]
+
<div class="pdbe-citations 5i77" style="background-color:#fffaf0;"></div>
-
[[Category: Chen, C.C]]
+
 
-
[[Category: Liu, W.D]]
+
==See Also==
-
[[Category: Guo, R.T]]
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
-
[[Category: Zheng, Y.Y]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Aspergillus niger]]
 +
[[Category: Large Structures]]
 +
[[Category: Chen CC]]
 +
[[Category: Guo RT]]
 +
[[Category: Li YJ]]
 +
[[Category: Liu WD]]
 +
[[Category: Zheng YY]]

Current revision

Crystal structure of a beta-1,4-endoglucanase from Aspergillus niger

PDB ID 5i77

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools