4ye7

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==N-terminal domain of Orf22, a Cydia pomonella granulovirus envelope protein==
==N-terminal domain of Orf22, a Cydia pomonella granulovirus envelope protein==
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<StructureSection load='4ye7' size='340' side='right' caption='[[4ye7]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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<StructureSection load='4ye7' size='340' side='right'caption='[[4ye7]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4ye7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YE7 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4ye7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cydia_pomonella_granulosis_virus_(isolate_Mexican) Cydia pomonella granulosis virus (isolate Mexican)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YE7 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ye7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ye7 OCA], [http://pdbe.org/4ye7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ye7 RCSB], [http://www.ebi.ac.uk/pdbsum/4ye7 PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ye7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ye7 OCA], [https://pdbe.org/4ye7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ye7 RCSB], [https://www.ebi.ac.uk/pdbsum/4ye7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ye7 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/P87582_GVCPM P87582_GVCPM]
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phenix.refine is a program within the PHENIX package that supports crystallographic structure refinement against experimental data with a wide range of upper resolution limits using a large repertoire of model parameterizations. It has several automation features and is also highly flexible. Several hundred parameters enable extensive customizations for complex use cases. Multiple user-defined refinement strategies can be applied to specific parts of the model in a single refinement run. An intuitive graphical user interface is available to guide novice users and to assist advanced users in managing refinement projects. X-ray or neutron diffraction data can be used separately or jointly in refinement. phenix.refine is tightly integrated into the PHENIX suite, where it serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB. This paper presents an overview of the major phenix.refine features, with extensive literature references for readers interested in more detailed discussions of the methods.
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Towards automated crystallographic structure refinement with phenix.refine.,Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi:, 10.1107/S0907444912001308. Epub 2012 Mar 16. PMID:22505256<ref>PMID:22505256</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4ye7" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Busby, J N]]
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[[Category: Large Structures]]
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[[Category: Metcalf, P]]
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[[Category: Busby JN]]
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[[Category: Calyx]]
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[[Category: Metcalf P]]
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[[Category: Envelope]]
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[[Category: Viral protein]]
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Current revision

N-terminal domain of Orf22, a Cydia pomonella granulovirus envelope protein

PDB ID 4ye7

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