This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4yag

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:03, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of LigL in complex with NADH from Sphingobium sp. strain SYK-6==
==Crystal structure of LigL in complex with NADH from Sphingobium sp. strain SYK-6==
-
<StructureSection load='4yag' size='340' side='right' caption='[[4yag]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='4yag' size='340' side='right'caption='[[4yag]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4yag]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YAG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YAG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4yag]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_sp._SYK-6 Sphingobium sp. SYK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YAG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YAG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4y98|4y98]], [[4y9d|4y9d]], [[4ya6|4ya6]], [[4yac|4yac]], [[4yae|4yae]], [[4yai|4yai]], [[4yam|4yam]], [[4yan|4yan]], [[4yap|4yap]], [[4yav|4yav]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yag FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yag OCA], [http://pdbe.org/4yag PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yag RCSB], [http://www.ebi.ac.uk/pdbsum/4yag PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yag FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yag OCA], [https://pdbe.org/4yag PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yag RCSB], [https://www.ebi.ac.uk/pdbsum/4yag PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yag ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C0SUJ9_SPHSK C0SUJ9_SPHSK]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adams, P D]]
+
[[Category: Large Structures]]
-
[[Category: Heins, R A]]
+
[[Category: Sphingobium sp. SYK-6]]
-
[[Category: McAndrew, R P]]
+
[[Category: Adams PD]]
-
[[Category: Pereira, J H]]
+
[[Category: Heins RA]]
-
[[Category: Sale, K L]]
+
[[Category: McAndrew RP]]
-
[[Category: Simmons, B A]]
+
[[Category: Pereira JH]]
-
[[Category: Oxidoreductase]]
+
[[Category: Sale KL]]
-
[[Category: Short chain dehydrogenase/reductase sdr family]]
+
[[Category: Simmons BA]]

Current revision

Crystal structure of LigL in complex with NADH from Sphingobium sp. strain SYK-6

PDB ID 4yag

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools