1gxi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:30, 15 May 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1gxi.gif|left|200px]]
 
-
{{Structure
+
==PsaE Subunit of the Photosystem I of the Cyanobacterium Synechocystis sp. PCC 6803==
-
|PDB= 1gxi |SIZE=350|CAPTION= <scene name='initialview01'>1gxi</scene>
+
<StructureSection load='1gxi' size='340' side='right'caption='[[1gxi]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1gxi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GXI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GXI FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gxi OCA], [https://pdbe.org/1gxi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gxi RCSB], [https://www.ebi.ac.uk/pdbsum/1gxi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gxi ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gxi OCA], [http://www.ebi.ac.uk/pdbsum/1gxi PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1gxi RCSB]</span>
+
[https://www.uniprot.org/uniprot/PSAE_SYNY3 PSAE_SYNY3] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''PSAE SUB-UNIT OF THE PHOTOSYSTEM I OF THE CYANOBACTERIUM SYNECHOCYSTIS SP. PCC 6803'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gx/1gxi_consurf.spt"</scriptWhenChecked>
-
==Overview==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gxi ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
PsaE is a small peripheral subunit of photosystem I (PSI) that is very accessible to the surrounding medium. It plays an essential role in optimizing the interactions with the soluble electron acceptors of PSI, ferredoxin and flavodoxin. The solution structure of PsaE from the cyanobacterium Synechocystis sp. PCC 6803 has been investigated by NMR with a special emphasis on its protein dynamic properties. PsaE is characterized by a well-defined central core that consists of a five-stranded beta-sheet (+1, +1, +1, -4x). Four loops (designated the A-B, B-C, C-D, and D-E loops) connect these beta-strands, the overall resulting structure being that of an SH3-like domain. As compared to previously determined PsaE structures, conformational differences are observed in the first three loops. The flexibility of the loops was investigated using (15)N relaxation experiments. This flexibility is small in amplitude for the A-B and B-C loops, but is large for the C-D loop, particularly in the region corresponding to the missing sequence of Nostoc sp. PCC 8009. The plasticity of the connecting loops in the free subunit is compared to that when bound to the PSI and discussed in relation to the insertion process and the function(s) of PsaE.
PsaE is a small peripheral subunit of photosystem I (PSI) that is very accessible to the surrounding medium. It plays an essential role in optimizing the interactions with the soluble electron acceptors of PSI, ferredoxin and flavodoxin. The solution structure of PsaE from the cyanobacterium Synechocystis sp. PCC 6803 has been investigated by NMR with a special emphasis on its protein dynamic properties. PsaE is characterized by a well-defined central core that consists of a five-stranded beta-sheet (+1, +1, +1, -4x). Four loops (designated the A-B, B-C, C-D, and D-E loops) connect these beta-strands, the overall resulting structure being that of an SH3-like domain. As compared to previously determined PsaE structures, conformational differences are observed in the first three loops. The flexibility of the loops was investigated using (15)N relaxation experiments. This flexibility is small in amplitude for the A-B and B-C loops, but is large for the C-D loop, particularly in the region corresponding to the missing sequence of Nostoc sp. PCC 8009. The plasticity of the connecting loops in the free subunit is compared to that when bound to the PSI and discussed in relation to the insertion process and the function(s) of PsaE.
-
==About this Structure==
+
Solution NMR structure and backbone dynamics of the PsaE subunit of photosystem I from Synechocystis sp. PCC 6803.,Barth P, Savarin P, Gilquin B, Lagoutte B, Ochsenbein F Biochemistry. 2002 Nov 26;41(47):13902-14. PMID:12437347<ref>PMID:12437347</ref>
-
1GXI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GXI OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Solution NMR structure and backbone dynamics of the PsaE subunit of photosystem I from Synechocystis sp. PCC 6803., Barth P, Savarin P, Gilquin B, Lagoutte B, Ochsenbein F, Biochemistry. 2002 Nov 26;41(47):13902-14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12437347 12437347]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 1gxi" style="background-color:#fffaf0;"></div>
-
[[Category: Synechocystis sp.]]
+
-
[[Category: Barth, P.]]
+
-
[[Category: Gilquin, B.]]
+
-
[[Category: Lagoutte, B.]]
+
-
[[Category: Ochsenbein, F.]]
+
-
[[Category: Savarin, P.]]
+
-
[[Category: photosynthesis,photosystem i,psae sub-unit,thylakoid]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:53:29 2008''
+
==See Also==
 +
*[[Photosystem I 3D structures|Photosystem I 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Synechocystis sp. PCC 6803]]
 +
[[Category: Barth P]]
 +
[[Category: Gilquin B]]
 +
[[Category: Lagoutte B]]
 +
[[Category: Ochsenbein F]]
 +
[[Category: Savarin P]]

Current revision

PsaE Subunit of the Photosystem I of the Cyanobacterium Synechocystis sp. PCC 6803

PDB ID 1gxi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1gxi"
Personal tools