This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5fue

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:27, 26 July 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Schistosoma mansoni HDAC8 complexed with 3- benzamido-benzohydroxamate==
==Crystal structure of Schistosoma mansoni HDAC8 complexed with 3- benzamido-benzohydroxamate==
-
<StructureSection load='5fue' size='340' side='right' caption='[[5fue]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5fue' size='340' side='right'caption='[[5fue]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5fue]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FUE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FUE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5fue]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Schistosoma_mansoni Schistosoma mansoni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FUE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FUE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMF:DIMETHYLFORMAMIDE'>DMF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=UV4:3-(BENZOYLAMINO)-N-OXOBENZAMIDE'>UV4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.199&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fue OCA], [http://pdbe.org/5fue PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fue RCSB], [http://www.ebi.ac.uk/pdbsum/5fue PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMF:DIMETHYLFORMAMIDE'>DMF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=UV4:3-(BENZOYLAMINO)-N-OXOBENZAMIDE'>UV4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fue OCA], [https://pdbe.org/5fue PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fue RCSB], [https://www.ebi.ac.uk/pdbsum/5fue PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fue ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A5H660_SCHMA A5H660_SCHMA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 19:
</div>
</div>
<div class="pdbe-citations 5fue" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5fue" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Histone deacetylase 3D structures|Histone deacetylase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Marek, M]]
+
[[Category: Large Structures]]
-
[[Category: Romier, C]]
+
[[Category: Schistosoma mansoni]]
-
[[Category: Deacetylation]]
+
[[Category: Marek M]]
-
[[Category: Histone]]
+
[[Category: Romier C]]
-
[[Category: Hydrolase]]
+
-
[[Category: Inhibition]]
+
-
[[Category: Platyhelminth]]
+

Current revision

Crystal structure of Schistosoma mansoni HDAC8 complexed with 3- benzamido-benzohydroxamate

PDB ID 5fue

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools