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| ==Crystal structure of the InhA:GSK_SB713 complex== | | ==Crystal structure of the InhA:GSK_SB713 complex== |
- | <StructureSection load='4qxm' size='340' side='right' caption='[[4qxm]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='4qxm' size='340' side='right'caption='[[4qxm]], [[Resolution|resolution]] 2.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4qxm]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QXM FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4qxm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QXM FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=713:N-(2-CHLORO-4-FLUOROBENZYL)-4-[(3,5-DIMETHYL-1H-PYRAZOL-1-YL)METHYL]BENZAMIDE'>713</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.196Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3oew|3oew]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=713:N-(2-CHLORO-4-FLUOROBENZYL)-4-[(3,5-DIMETHYL-1H-PYRAZOL-1-YL)METHYL]BENZAMIDE'>713</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Enoyl-[acyl-carrier-protein]_reductase_(NADH) Enoyl-[acyl-carrier-protein] reductase (NADH)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.9 1.3.1.9] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qxm OCA], [https://pdbe.org/4qxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qxm RCSB], [https://www.ebi.ac.uk/pdbsum/4qxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qxm ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qxm OCA], [http://pdbe.org/4qxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qxm RCSB], [http://www.ebi.ac.uk/pdbsum/4qxm PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/INHA_MYCTU INHA_MYCTU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4qxm" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4qxm" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Enoyl-Acyl-Carrier Protein Reductase 3D structures|Enoyl-Acyl-Carrier Protein Reductase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Gulten, G]] | + | [[Category: Large Structures]] |
- | [[Category: Sacchettini, J C]] | + | [[Category: Mycobacterium tuberculosis H37Rv]] |
- | [[Category: Enoyl-acp reductase]] | + | [[Category: Gulten G]] |
- | [[Category: Nadh binding]] | + | [[Category: Sacchettini JC]] |
- | [[Category: Oxidoreductase-oxidoreductase inhibitor complex]]
| + | |
- | [[Category: Rossmann fold]]
| + | |
| Structural highlights
Function
INHA_MYCTU
Publication Abstract from PubMed
Isoniazid (INH) remains one of the cornerstones of antitubercular chemotherapy for drug-sensitive strains of M. tuberculosis bacteria. However, the increasing prevalence of multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains containing mutations in the KatG enzyme, which is responsible for the activation of INH into its antitubercular form, have rendered this drug of little or no use in many cases of drug-resistant tuberculosis. Presented herein is a novel family of antitubercular direct NADH-dependent 2-trans enoyl-acyl carrier protein reductase (InhA) inhibitors based on an N-benzyl-4-((heteroaryl)methyl)benzamide template; unlike INH, these do not require prior activation by KatG. Given their direct InhA target engagement, these compounds should be able to circumvent KatG-related resistance in the clinic. The lead molecules were shown to be potent inhibitors of InhA and showed activity against M. tuberculosis bacteria. This new family of inhibitors was found to be chemically tractable, as exemplified by the facile synthesis of analogues and the establishment of structure-activity relationships. Furthermore, a co-crystal structure of the initial hit with the enzyme is disclosed, providing valuable information toward the design of new InhA inhibitors for the treatment of MDR/XDR tuberculosis.
N-Benzyl-4-((heteroaryl)methyl)benzamides: A New Class of Direct NADH-Dependent 2-trans Enoyl-Acyl Carrier Protein Reductase (InhA) Inhibitors with Antitubercular Activity.,Guardia A, Gulten G, Fernandez R, Gomez J, Wang F, Convery M, Blanco D, Martinez M, Perez-Herran E, Alonso M, Ortega F, Rullas J, Calvo D, Mata L, Young R, Sacchettini JC, Mendoza-Losana A, Remuinan M, Ballell Pages L, Castro-Pichel J ChemMedChem. 2016 Apr 5;11(7):687-701. doi: 10.1002/cmdc.201600020. Epub 2016 Mar, 2. PMID:26934341[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Guardia A, Gulten G, Fernandez R, Gomez J, Wang F, Convery M, Blanco D, Martinez M, Perez-Herran E, Alonso M, Ortega F, Rullas J, Calvo D, Mata L, Young R, Sacchettini JC, Mendoza-Losana A, Remuinan M, Ballell Pages L, Castro-Pichel J. N-Benzyl-4-((heteroaryl)methyl)benzamides: A New Class of Direct NADH-Dependent 2-trans Enoyl-Acyl Carrier Protein Reductase (InhA) Inhibitors with Antitubercular Activity. ChemMedChem. 2016 Apr 5;11(7):687-701. doi: 10.1002/cmdc.201600020. Epub 2016 Mar, 2. PMID:26934341 doi:http://dx.doi.org/10.1002/cmdc.201600020
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