5fny
From Proteopedia
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==Low solvent content crystal form of Zn containing Iron sulfur cluster repair protein YtfE== | ==Low solvent content crystal form of Zn containing Iron sulfur cluster repair protein YtfE== | ||
- | <StructureSection load='5fny' size='340' side='right' caption='[[5fny]], [[Resolution|resolution]] 2.01Å' scene=''> | + | <StructureSection load='5fny' size='340' side='right'caption='[[5fny]], [[Resolution|resolution]] 2.01Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5fny]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNY OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5fny]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FNY FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fny FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fny OCA], [https://pdbe.org/5fny PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fny RCSB], [https://www.ebi.ac.uk/pdbsum/5fny PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fny ProSAT]</span></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/YTFE_ECOLI YTFE_ECOLI] Di-iron-containing protein involved in the repair of iron-sulfur clusters damaged by oxidative and nitrosative stress conditions.<ref>PMID:16553864</ref> <ref>PMID:17289666</ref> <ref>PMID:18357473</ref> |
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Molecular mechanisms underlying the repair of nitrosylated [Fe-S] clusters by the microbial protein YtfE remain poorly understood. The X-ray crystal structure of YtfE, in combination with EPR, magnetic circular dichroism (MCD), UV, and 17 O-labeling electron spin echo envelope modulation measurements, show that each iron of the oxo-bridged FeII -FeIII diiron core is coordinatively unsaturated with each iron bound to two bridging carboxylates and two terminal histidines in addition to an oxo-bridge. Structural analysis reveals that there are two solvent-accessible tunnels, both of which converge to the diiron center and are critical for capturing substrates. The reactivity of the reduced-form FeII -FeII YtfE toward nitric oxide demonstrates that the prerequisite for N2 O production requires the two iron sites to be nitrosylated simultaneously. Specifically, the nitrosylation of the two iron sites prior to their reductive coupling to produce N2 O is cooperative. This result suggests that, in addition to any repair of iron centers (RIC) activity, YtfE acts as an NO-trapping scavenger to promote the NO to N2 O transformation under low NO flux, which precedes nitrosative stress. | ||
+ | |||
+ | Crystal Structure Analysis of the Repair of Iron Centers Protein YtfE and Its Interaction with NO.,Lo FC, Hsieh CC, Maestre-Reyna M, Chen CY, Ko TP, Horng YC, Lai YC, Chiang YW, Chou CM, Chiang CH, Huang WN, Lin YH, Bohle DS, Liaw WF Chemistry. 2016 Jun 1. doi: 10.1002/chem.201600990. PMID:27246459<ref>PMID:27246459</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5fny" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Chen | + | [[Category: Escherichia coli K-12]] |
- | [[Category: Chiang | + | [[Category: Large Structures]] |
- | [[Category: Chiang | + | [[Category: Chen C-Y]] |
- | [[Category: Chou | + | [[Category: Chiang C-H]] |
- | [[Category: Horng | + | [[Category: Chiang Y-W]] |
- | [[Category: Hsieh | + | [[Category: Chou C-M]] |
- | [[Category: Huang | + | [[Category: Horng Y-C]] |
- | [[Category: Ko | + | [[Category: Hsieh C-C]] |
- | [[Category: Lai | + | [[Category: Huang W-N]] |
- | [[Category: Liaw | + | [[Category: Ko T-P]] |
- | [[Category: Lo | + | [[Category: Lai Y-C]] |
- | [[Category: Maestre-Reyna | + | [[Category: Liaw W-F]] |
- | + | [[Category: Lo F-C]] | |
- | + | [[Category: Maestre-Reyna M]] | |
- | + | ||
- | + |
Current revision
Low solvent content crystal form of Zn containing Iron sulfur cluster repair protein YtfE
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Categories: Escherichia coli K-12 | Large Structures | Chen C-Y | Chiang C-H | Chiang Y-W | Chou C-M | Horng Y-C | Hsieh C-C | Huang W-N | Ko T-P | Lai Y-C | Liaw W-F | Lo F-C | Maestre-Reyna M