5dlt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (21:48, 28 June 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Autotaxin (ENPP2) with 7-alpha-hydroxycholesterol==
==Crystal structure of Autotaxin (ENPP2) with 7-alpha-hydroxycholesterol==
-
<StructureSection load='5dlt' size='340' side='right' caption='[[5dlt]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='5dlt' size='340' side='right'caption='[[5dlt]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5dlt]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DLT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DLT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5dlt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DLT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DLT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5JK:7ALPHA-HYDROXYCHOLESTEROL'>5JK</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5JK:7ALPHA-HYDROXYCHOLESTEROL'>5JK</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alkylglycerophosphoethanolamine_phosphodiesterase Alkylglycerophosphoethanolamine phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.39 3.1.4.39] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dlt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dlt OCA], [https://pdbe.org/5dlt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dlt RCSB], [https://www.ebi.ac.uk/pdbsum/5dlt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dlt ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dlt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dlt OCA], [http://pdbe.org/5dlt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dlt RCSB], [http://www.ebi.ac.uk/pdbsum/5dlt PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ENPP2_RAT ENPP2_RAT]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5dlt" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5dlt" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ectonucleotide pyrophosphatase/phosphodiesterase 3D structures|Ectonucleotide pyrophosphatase/phosphodiesterase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alkylglycerophosphoethanolamine phosphodiesterase]]
+
[[Category: Large Structures]]
-
[[Category: Hausmann, J]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Joosten, R P]]
+
[[Category: Hausmann J]]
-
[[Category: Perrakis, A]]
+
[[Category: Joosten RP]]
-
[[Category: Autotaxin]]
+
[[Category: Perrakis A]]
-
[[Category: Bile salt]]
+
-
[[Category: Enpp2]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lpa]]
+
-
[[Category: Steroid]]
+

Current revision

Crystal structure of Autotaxin (ENPP2) with 7-alpha-hydroxycholesterol

PDB ID 5dlt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools