5ija
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis== | |
| + | <StructureSection load='5ija' size='340' side='right'caption='[[5ija]], [[Resolution|resolution]] 1.82Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5ija]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IJA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IJA FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ija FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ija OCA], [https://pdbe.org/5ija PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ija RCSB], [https://www.ebi.ac.uk/pdbsum/5ija PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ija ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q8NKS1_THEKO Q8NKS1_THEKO] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | A [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1 (TkHybD) is involved in the cleavage of the C-terminal residues of [NiFe] hydrogenase large subunits by Ni recognition. Here, we report the crystal structure of TkHybD at 1.82 A resolution to better understand this process. TkHybD exhibits an alpha/beta/alpha sandwich fold with conserved residues responsible for the Ni recognition. Comparisons of TkHybD with homologous proteins also reveal that they share a common overall architecture, suggesting that they have similar catalytic functions. Our results including metal binding site prediction provide insight into the substrate recognition and catalysis mechanism of TkHybD. This article is protected by copyright. All rights reserved. | ||
| - | + | Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1.,Kwon S, Nishitani Y, Watanabe S, Hirao Y, Imanaka T, Kanai T, Atomi H, Miki K Proteins. 2016 May 18. doi: 10.1002/prot.25070. PMID:27192667<ref>PMID:27192667</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Kwon | + | <div class="pdbe-citations 5ija" style="background-color:#fffaf0;"></div> |
| - | [[Category: Miki | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Thermococcus kodakarensis KOD1]] | ||
| + | [[Category: Kwon S]] | ||
| + | [[Category: Miki K]] | ||
| + | [[Category: Nishitani Y]] | ||
| + | [[Category: Watanabe S]] | ||
Current revision
[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis
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