5imr
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Structure of ribosome bound to cofactor at 5.7 angstrom resolution== | |
+ | <SX load='5imr' size='340' side='right' viewer='molstar' caption='[[5imr]], [[Resolution|resolution]] 5.70Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5imr]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IMR FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 5.7Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5imr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5imr OCA], [https://pdbe.org/5imr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5imr RCSB], [https://www.ebi.ac.uk/pdbsum/5imr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5imr ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Elongation factor 4 (EF4) is a member of the family of ribosome-dependent translational GTPase (trGTPase) factors, along with elongation factor G (EF-G) and BPI-inducible protein A (BipA). Although EF4 is highly conserved in bacterial, mitochondrial, and chloroplast genomes, its exact biological function remains controversial. Here, we present the cryo-EM reconstitution of the GTP form of EF4 bound to the ribosome with P- and E-site tRNAs at 3.8 A resolution. Interestingly, our structure reveals an unrotated ribosome rather than a clockwise-rotated ribosome, as observed in the presence of EF4-GDP and P-site tRNA. In addition, we also observed an counterclockwise rotated form of the above complex at 5.7 A resolution. Taken together, our results shed light on the interactions formed between EF4, the ribosome, and the P-site tRNA and illuminate the GTPase activation mechanism at previously unresolved detail. | ||
- | + | Structure of the GTP form of elongation factor 4 (EF4) bound to the ribosome.,Kumar V, Ero R, Ahmed T, Goh KJ, Zhan Y, Bhushan S, Gao YG J Biol Chem. 2016 May 2. pii: jbc.M116.725945. PMID:27137929<ref>PMID:27137929</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5imr" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: | + | ==See Also== |
- | [[Category: Ero | + | *[[Elongation factor 3D structures|Elongation factor 3D structures]] |
- | [[Category: | + | *[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]] |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
+ | __TOC__ | ||
+ | </SX> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Thermus thermophilus HB8]] | ||
+ | [[Category: Ahmed T]] | ||
+ | [[Category: Bhushan S]] | ||
+ | [[Category: Ero R]] | ||
+ | [[Category: Gao YG]] | ||
+ | [[Category: Jian GK]] | ||
+ | [[Category: Kumar V]] | ||
+ | [[Category: Zhan Y]] |
Current revision
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
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Categories: Large Structures | Thermus thermophilus HB8 | Ahmed T | Bhushan S | Ero R | Gao YG | Jian GK | Kumar V | Zhan Y