5j0e
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structures of Pribnow box consensus promoter sequence (P32)== | |
| + | <StructureSection load='5j0e' size='340' side='right'caption='[[5j0e]], [[Resolution|resolution]] 2.81Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J0E FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.81Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [https://pdbe.org/5j0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [https://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | It has previously been shown that the use of racemic mixtures of naturally chiral macromolecules such as protein and DNA can significantly aid the crystallogenesis process, thereby addressing one of the major bottlenecks to structure determination by X-ray crystallographic methods-that of crystal growth. Although previous studies have provided convincing evidence of the applicability of the racemic crystallization technique to DNA through the study of well-characterized DNA structures, we sought to apply this method to a historically challenging DNA sequence. For this purpose we chose a non-self-complementary DNA duplex containing the biologically-relevant Pribnow box consensus sequence 'TATAAT'. Four racemic crystal structures of this previously un-crystallizable DNA target are reported (with resolutions in the range of 1.65-2.3 A), with further crystallographic studies and structural analysis providing insight into the racemic crystallization process as well as structural details of this highly pertinent DNA sequence. | ||
| - | + | Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.,Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I Nucleic Acids Res. 2016 May 2. pii: gkw367. PMID:27137886<ref>PMID:27137886</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Collie | + | <div class="pdbe-citations 5j0e" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: Kauffmann | + | <references/> |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Synthetic construct]] | ||
| + | [[Category: Collie GW]] | ||
| + | [[Category: Huc I]] | ||
| + | [[Category: Kauffmann B]] | ||
| + | [[Category: Mandal PK]] | ||
Current revision
Crystal structures of Pribnow box consensus promoter sequence (P32)
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