5j6c

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(New page: '''Unreleased structure''' The entry 5j6c is ON HOLD until sometime in the future Authors: Powell, S.M., Wang, B., Hessami, N., Najar, F.Z., Thomas, L.M., West, A.H., Karr, E.A., Richte...)
Current revision (10:50, 6 September 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5j6c is ON HOLD until sometime in the future
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==FMN-dependent Nitroreductase (CDR20291_0767) from Clostridium difficile R20291==
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<StructureSection load='5j6c' size='340' side='right'caption='[[5j6c]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5j6c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_R20291 Clostridioides difficile R20291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J6C FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.096&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6c OCA], [https://pdbe.org/5j6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j6c RCSB], [https://www.ebi.ac.uk/pdbsum/5j6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6c ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nitroreductases (NRs) are flavin mononucleotide (FMN)-dependent enzymes that catalyze the biotransformation of organic nitro compounds (RNO2; R = alkyl, aryl) to the nitroso RN = O, hydroxylamino RNHOH, or amine RNH2 derivatives. Metronidazole (Mtz) is a nitro-containing antibiotic that is commonly prescribed for lower-gut infections caused by the anaerobic bacterium Clostridium difficile. C. difficile infections rank number one among hospital acquired infections, and can result in diarrhea, severe colitis, or even death. Although NRs have been implicated in Mtz resistance of C. difficile, no NRs have been characterized from the hypervirulent R20291 strain of C. difficile. We report the first expression, purification, and three-dimensional X-ray crystal structures of two NRs from the C. difficile R20291 strain. The X-ray crystal structures of the two NRs were solved to 2.1 A resolution. Their homodimeric structures exhibit the classic NR alpha+beta fold, with each protomer binding one FMN cofactor near the dimer interface. Functional assays demonstrate that these two NRs metabolize Mtz with associated re-oxidation of the proteins. Importantly, these results represent the first isolation and characterization of NRs from the hypervirulent R20291 strain of relevance to organic RNO2 (e.g., Mtz) metabolism.
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Authors: Powell, S.M., Wang, B., Hessami, N., Najar, F.Z., Thomas, L.M., West, A.H., Karr, E.A., Richter-Addo, G.B.
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Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.,Wang B, Powell SM, Hessami N, Najar FZ, Thomas LM, Karr EA, West AH, Richter-Addo GB Nitric Oxide. 2016 Sep 10. pii: S1089-8603(16)30090-8. doi:, 10.1016/j.niox.2016.09.003. PMID:27623089<ref>PMID:27623089</ref>
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Description: FMN-dependent Nitroreductase (CDR20291_0767) from Clostridium difficile R20291
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Karr, E.A]]
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<div class="pdbe-citations 5j6c" style="background-color:#fffaf0;"></div>
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[[Category: Hessami, N]]
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== References ==
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[[Category: Richter-Addo, G.B]]
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<references/>
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[[Category: Thomas, L.M]]
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__TOC__
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[[Category: West, A.H]]
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</StructureSection>
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[[Category: Wang, B]]
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[[Category: Clostridioides difficile R20291]]
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[[Category: Najar, F.Z]]
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[[Category: Large Structures]]
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[[Category: Powell, S.M]]
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[[Category: Hessami N]]
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[[Category: Karr EA]]
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[[Category: Najar FZ]]
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[[Category: Powell SM]]
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[[Category: Richter-Addo GB]]
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[[Category: Thomas LM]]
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[[Category: Wang B]]
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[[Category: West AH]]

Current revision

FMN-dependent Nitroreductase (CDR20291_0767) from Clostridium difficile R20291

PDB ID 5j6c

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