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5iuc
From Proteopedia
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==Crystal structure of the GspB siglec domain with sialyl T antigen bound== | ==Crystal structure of the GspB siglec domain with sialyl T antigen bound== | ||
| - | <StructureSection load='5iuc' size='340' side='right' caption='[[5iuc]], [[Resolution|resolution]] 1.25Å' scene=''> | + | <StructureSection load='5iuc' size='340' side='right'caption='[[5iuc]], [[Resolution|resolution]] 1.25Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5iuc]] is a 2 chain structure. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4i8e 4i8e] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3qd1 3qd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IUC OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5iuc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_gordonii Streptococcus gordonii]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4i8e 4i8e] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3qd1 3qd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IUC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IUC FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.253Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iuc OCA], [https://pdbe.org/5iuc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iuc RCSB], [https://www.ebi.ac.uk/pdbsum/5iuc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iuc ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/GSPB_STRGN GSPB_STRGN] Plays a role in virulence and host-pathogen interactions. Mediates binding to human platelets via interaction with the human cell surface glycoprotein GP1BA.<ref>PMID:21765814</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Streptococcus gordonii]] |
| - | [[Category: | + | [[Category: Fialkowski KP]] |
| - | [[Category: | + | [[Category: Iverson TM]] |
| - | [[Category: | + | [[Category: Loukachevitch LV]] |
| - | [[Category: | + | [[Category: Wawrzak Z]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the GspB siglec domain with sialyl T antigen bound
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