This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5dwk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:03, 28 June 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Diacylglycerol Kinase solved by multi crystal multi orientation native SAD==
==Diacylglycerol Kinase solved by multi crystal multi orientation native SAD==
-
<StructureSection load='5dwk' size='340' side='right' caption='[[5dwk]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+
<StructureSection load='5dwk' size='340' side='right'caption='[[5dwk]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5dwk]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DWK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5dwk]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DWK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78M:(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE'>78M</scene>, <scene name='pdbligand=78N:(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE'>78N</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.601&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diacylglycerol_kinase Diacylglycerol kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.107 2.7.1.107] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=78M:(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE'>78M</scene>, <scene name='pdbligand=78N:(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE'>78N</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dwk OCA], [http://pdbe.org/5dwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dwk RCSB], [http://www.ebi.ac.uk/pdbsum/5dwk PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dwk OCA], [https://pdbe.org/5dwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dwk RCSB], [https://www.ebi.ac.uk/pdbsum/5dwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dwk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/KDGL_ECOLI KDGL_ECOLI]] Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
+
[https://www.uniprot.org/uniprot/KDGL_ECOLI KDGL_ECOLI] Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5dwk" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5dwk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Diacylglycerol kinase 3D structures|Diacylglycerol kinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Diacylglycerol kinase]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Caffrey, M]]
+
[[Category: Large Structures]]
-
[[Category: Finke, A D]]
+
[[Category: Caffrey M]]
-
[[Category: Li, D]]
+
[[Category: Finke AD]]
-
[[Category: Olieric, V]]
+
[[Category: Li D]]
-
[[Category: Wang, M]]
+
[[Category: Olieric V]]
-
[[Category: Weinert, T]]
+
[[Category: Wang M]]
-
[[Category: Dagk]]
+
[[Category: Weinert T]]
-
[[Category: Multi crystal]]
+
-
[[Category: Multi orientation]]
+
-
[[Category: Native sad]]
+
-
[[Category: Transferase]]
+

Current revision

Diacylglycerol Kinase solved by multi crystal multi orientation native SAD

PDB ID 5dwk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5dwk"
Personal tools