5irf
From Proteopedia
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(New page: ==Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group== <StructureSection load='5irf' size='340' side='right' caption='5irf, [[Resol...) |
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==Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group== | ==Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group== | ||
| - | <StructureSection load='5irf' size='340' side='right' caption='[[5irf]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='5irf' size='340' side='right'caption='[[5irf]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5irf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IRF OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5irf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseburia_intestinalis_XB6B4 Roseburia intestinalis XB6B4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IRF FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5irf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5irf OCA], [https://pdbe.org/5irf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5irf RCSB], [https://www.ebi.ac.uk/pdbsum/5irf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5irf ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/D4L313_9FIRM D4L313_9FIRM] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Group II introns are self-splicing ribozymes that are essential in many organisms, and they have been hypothesized to share a common evolutionary ancestor with the spliceosome. Although structural similarity of RNA components supports this connection, it is of interest to determine whether associated protein factors also share an evolutionary heritage. Here we present the crystal structures of reverse transcriptase (RT) domains from two group II intron-encoded proteins (maturases) from Roseburia intestinalis and Eubacterium rectale, obtained at 1.2-A and 2.1-A resolution, respectively. These domains are more similar in architecture to the spliceosomal Prp8 RT-like domain than to any other RTs, and they share substantial similarity with flaviviral RNA polymerases. The RT domain itself is sufficient for binding intron RNA with high affinity and specificity, and it is contained within an active RT enzyme. These studies provide a foundation for understanding structure-function relationships within group II intron-maturase complexes. | ||
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| + | Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution.,Zhao C, Pyle AM Nat Struct Mol Biol. 2016 May 2. doi: 10.1038/nsmb.3224. PMID:27136328<ref>PMID:27136328</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5irf" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Roseburia intestinalis XB6B4]] |
| - | [[Category: | + | [[Category: Pyle AM]] |
| - | [[Category: | + | [[Category: Zhao C]] |
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| - | + | ||
Current revision
Reverse transcriptase domain of group II intron maturase from Roseburia intestinalis in P1 space group
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