This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5ak7
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Structure of wt Porphyromonas gingivalis peptidylarginine deiminase== | ==Structure of wt Porphyromonas gingivalis peptidylarginine deiminase== | ||
| - | <StructureSection load='5ak7' size='340' side='right' caption='[[5ak7]], [[Resolution|resolution]] 1.46Å' scene=''> | + | <StructureSection load='5ak7' size='340' side='right'caption='[[5ak7]], [[Resolution|resolution]] 1.46Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5ak7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AK7 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5ak7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AK7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.46Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ak7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ak7 OCA], [https://pdbe.org/5ak7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ak7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ak7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ak7 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/PAD_PORGI PAD_PORGI] Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth.<ref>PMID:10377098</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 23: | Line 23: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Burgess-Brown | + | [[Category: Large Structures]] |
| - | [[Category: Kiyani | + | [[Category: Porphyromonas gingivalis]] |
| - | [[Category: Kopec | + | [[Category: Burgess-Brown N]] |
| - | [[Category: Montgomery | + | [[Category: Kiyani W]] |
| - | [[Category: Nowak | + | [[Category: Kopec J]] |
| - | [[Category: Shrestha | + | [[Category: Montgomery A]] |
| - | [[Category: Venables | + | [[Category: Nowak R]] |
| - | [[Category: Yue | + | [[Category: Shrestha L]] |
| - | + | [[Category: Venables PJ]] | |
| - | + | [[Category: Yue WW]] | |
Current revision
Structure of wt Porphyromonas gingivalis peptidylarginine deiminase
| |||||||||||
