This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5fnn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:59, 19 July 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Iron and Selenomethionine containing Iron sulfur cluster repair protein YtfE==
==Iron and Selenomethionine containing Iron sulfur cluster repair protein YtfE==
-
<StructureSection load='5fnn' size='340' side='right' caption='[[5fnn]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
+
<StructureSection load='5fnn' size='340' side='right'caption='[[5fnn]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5fnn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FNN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5fnn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FNN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fnp|5fnp]], [[5fny|5fny]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fnn OCA], [https://pdbe.org/5fnn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fnn RCSB], [https://www.ebi.ac.uk/pdbsum/5fnn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fnn ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitric-oxide_reductase_(cytochrome_c) Nitric-oxide reductase (cytochrome c)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.5 1.7.2.5] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fnn OCA], [http://pdbe.org/5fnn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fnn RCSB], [http://www.ebi.ac.uk/pdbsum/5fnn PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/YTFE_ECOLI YTFE_ECOLI]] Di-iron-containing protein involved in the repair of iron-sulfur clusters damaged by oxidative and nitrosative stress conditions.<ref>PMID:16553864</ref> <ref>PMID:17289666</ref> <ref>PMID:18357473</ref>
+
[https://www.uniprot.org/uniprot/YTFE_ECOLI YTFE_ECOLI] Di-iron-containing protein involved in the repair of iron-sulfur clusters damaged by oxidative and nitrosative stress conditions.<ref>PMID:16553864</ref> <ref>PMID:17289666</ref> <ref>PMID:18357473</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chen, C Y]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Chiang, C H]]
+
[[Category: Large Structures]]
-
[[Category: Chiang, Y W]]
+
[[Category: Chen C-Y]]
-
[[Category: Chou, C M]]
+
[[Category: Chiang C-H]]
-
[[Category: Horng, Y C]]
+
[[Category: Chiang Y-W]]
-
[[Category: Hsieh, C C]]
+
[[Category: Chou C-M]]
-
[[Category: Huang, W N]]
+
[[Category: Horng Y-C]]
-
[[Category: Ko, T P]]
+
[[Category: Hsieh C-C]]
-
[[Category: Lai, Y C]]
+
[[Category: Huang W-N]]
-
[[Category: Liaw, W F]]
+
[[Category: Ko T-P]]
-
[[Category: Lo, F C]]
+
[[Category: Lai Y-C]]
-
[[Category: Maestre-Reyna, M]]
+
[[Category: Liaw W-F]]
-
[[Category: Di-fe center]]
+
[[Category: Lo F-C]]
-
[[Category: Iron-sulfur cluster repair]]
+
[[Category: Maestre-Reyna M]]
-
[[Category: Nitric oxide]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Iron and Selenomethionine containing Iron sulfur cluster repair protein YtfE

PDB ID 5fnn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools