This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4uau

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:27, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with Xylulose-(1,5)bisphosphate, crystal form II==
==Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with Xylulose-(1,5)bisphosphate, crystal form II==
-
<StructureSection load='4uau' size='340' side='right' caption='[[4uau]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='4uau' size='340' side='right'caption='[[4uau]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4uau]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UAU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4uau]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UAU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=XBP:XYLULOSE-1,5-BISPHOSPHATE'>XBP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uau OCA], [http://pdbe.org/4uau PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4uau RCSB], [http://www.ebi.ac.uk/pdbsum/4uau PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=XBP:XYLULOSE-1,5-BISPHOSPHATE'>XBP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4uau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uau OCA], [https://pdbe.org/4uau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4uau RCSB], [https://www.ebi.ac.uk/pdbsum/4uau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4uau ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CBBY_CERSP CBBY_CERSP] Highly selective xylulose-1,5-bisphosphate (XuBP) phosphatase. Shows also activity towards ribulose-1,5-bisphosphate (RuBP) and fructose-1,6-bisphosphate (FBP), but not towards fructose-6-phosphate (F6P) or ribulose-5-phosphate (Ru5P) (PubMed:27246049). Degrades xylulose-1,5-bisphosphate, a potent inhibitor of rubisco produced by the rubisco itself (PubMed:27246049).<ref>PMID:27246049</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bracher, A]]
+
[[Category: Cereibacter sphaeroides]]
-
[[Category: Hartl, F U]]
+
[[Category: Large Structures]]
-
[[Category: Hayer-Hartl, M]]
+
[[Category: Bracher A]]
-
[[Category: Sharma, A]]
+
[[Category: Hartl FU]]
-
[[Category: Starling-Windhof, A]]
+
[[Category: Hayer-Hartl M]]
-
[[Category: Hydrolase]]
+
[[Category: Sharma A]]
-
[[Category: Phosphatase]]
+
[[Category: Starling-Windhof A]]

Current revision

Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with Xylulose-(1,5)bisphosphate, crystal form II

PDB ID 4uau

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools