5b6q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 5b6q is ON HOLD Authors: Description: Category: Unreleased Structures)
Current revision (06:40, 31 May 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5b6q is ON HOLD
+
==Crystal structure of monomeric cytochrome c5 from Shewanella violacea==
 +
<StructureSection load='5b6q' size='340' side='right'caption='[[5b6q]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5b6q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_violacea Shewanella violacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B6Q FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b6q OCA], [https://pdbe.org/5b6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b6q RCSB], [https://www.ebi.ac.uk/pdbsum/5b6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b6q ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D4ZE39_SHEVD D4ZE39_SHEVD]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea (SVcytc5) was stable against heat and denaturant compared with the homologous protein from shallow-sea piezo-sensitive Shewanella livingstonensis (SLcytc5). Here, the SVcytc5 crystal structure revealed that the Lys-50 side chain on the flexible loop formed a hydrogen bond with heme whereas that of corresponding hydrophobic Leu-50 could not form such a bond in SLcytc5, which appeared to be one of possible factors responsible for the difference in stability between the two proteins. This structural insight was confirmed by a reciprocal mutagenesis study on the thermal stability of these two proteins. As SVcytc5 was isolated from a deep-sea piezophilic bacterium, the present comparative study indicates that adaptation of monomeric SVcytc5 to high pressure environments results in stabilization against heat.
-
Authors:
+
Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea.,Masanari M, Fujii S, Kawahara K, Oki H, Tsujino H, Maruno T, Kobayashi Y, Ohkubo T, Wakai S, Sambongi Y Biosci Biotechnol Biochem. 2016 Dec;80(12):2365-2370. Epub 2016 Sep 20. PMID:27648635<ref>PMID:27648635</ref>
-
Description:
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
 +
<div class="pdbe-citations 5b6q" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shewanella violacea]]
 +
[[Category: Fujii S]]
 +
[[Category: Harada Y]]
 +
[[Category: Kawahara K]]
 +
[[Category: Kobayashi Y]]
 +
[[Category: Maruno T]]
 +
[[Category: Masanari M]]
 +
[[Category: Nishiyama M]]
 +
[[Category: Ohkubo T]]
 +
[[Category: Oki H]]
 +
[[Category: Sambongi Y]]
 +
[[Category: Tsujino H]]
 +
[[Category: Wakai S]]

Current revision

Crystal structure of monomeric cytochrome c5 from Shewanella violacea

PDB ID 5b6q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5b6q"
Personal tools