5hyg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 27 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==CmlI (peroxo bound state), arylamine oxygenase of chloramphenicol biosynthetic pathway==
==CmlI (peroxo bound state), arylamine oxygenase of chloramphenicol biosynthetic pathway==
-
<StructureSection load='5hyg' size='340' side='right' caption='[[5hyg]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
+
<StructureSection load='5hyg' size='340' side='right'caption='[[5hyg]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5hyg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HYG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5hyg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_venezuelae_ATCC_10712 Streptomyces venezuelae ATCC 10712]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HYG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hyh|5hyh]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hyg OCA], [http://pdbe.org/5hyg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hyg RCSB], [http://www.ebi.ac.uk/pdbsum/5hyg PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hyg OCA], [https://pdbe.org/5hyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hyg RCSB], [https://www.ebi.ac.uk/pdbsum/5hyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hyg ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CMLI_STRVP CMLI_STRVP] Involved in chloramphenicol biosynthesis (PubMed:24347692, PubMed:25564306). Catalyzes the six-electron oxidation of an aryl-amine precursor of chloramphenicol (NH2-CAM) to yield the aryl-nitro group of chloramphenicol (CAM) (PubMed:24347692, PubMed:25564306, PubMed:27203126). During catalysis, upon exposure of the diferrous cluster to O(2), ClmI forms an exceptionally long-lived peroxo intermediate (CmlI-peroxo), which reacts with NH2-CAM to form CAM (PubMed:25564306, PubMed:27203126).<ref>PMID:24347692</ref> <ref>PMID:25564306</ref> <ref>PMID:27203126</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Knoot, C J]]
+
[[Category: Large Structures]]
-
[[Category: Lipscomb, J D]]
+
[[Category: Streptomyces venezuelae ATCC 10712]]
-
[[Category: Antibiotic biosynthesis]]
+
[[Category: Knoot CJ]]
-
[[Category: Diiron cluster]]
+
[[Category: Lipscomb JD]]
-
[[Category: Metal binding protein]]
+
-
[[Category: Non-heme iron]]
+
-
[[Category: Oxygen activation]]
+

Current revision

CmlI (peroxo bound state), arylamine oxygenase of chloramphenicol biosynthetic pathway

PDB ID 5hyg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools