This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5i44

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:33, 6 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of RacA-DNA complex; P21 form==
==Structure of RacA-DNA complex; P21 form==
-
<StructureSection load='5i44' size='340' side='right' caption='[[5i44]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
+
<StructureSection load='5i44' size='340' side='right'caption='[[5i44]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5i44]] is a 16 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I44 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I44 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5i44]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I44 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5i41|5i41]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.621&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i44 OCA], [http://pdbe.org/5i44 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i44 RCSB], [http://www.ebi.ac.uk/pdbsum/5i44 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i44 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i44 OCA], [https://pdbe.org/5i44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i44 RCSB], [https://www.ebi.ac.uk/pdbsum/5i44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i44 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RACA_BACSU RACA_BACSU]] Required for the formation of axial filaments and for anchoring the origin regions at the cell poles in sporulating cells, thus ensuring proper chromosome segregation in the prespore. Binds in a dispersed manner throughout the chromosome but preferentially to sites clustered in the origin portion of the chromosome, causing condensation of the chromosome and its remodeling into an elongated, anchored structure.<ref>PMID:12493822</ref> <ref>PMID:12950914</ref>
+
[https://www.uniprot.org/uniprot/RACA_BACSU RACA_BACSU] Required for the formation of axial filaments and for anchoring the origin regions at the cell poles in sporulating cells, thus ensuring proper chromosome segregation in the prespore. Binds in a dispersed manner throughout the chromosome but preferentially to sites clustered in the origin portion of the chromosome, causing condensation of the chromosome and its remodeling into an elongated, anchored structure.<ref>PMID:12493822</ref> <ref>PMID:12950914</ref>
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
DuringBacillus subtilissporulation, segregating sister chromosomes are anchored to cell poles and the chromosome is remodeled into an elongated structure called the axial filament. Data indicate that a developmentally regulated protein called RacA is involved in these functions. To gain insight into how RacA performs these diverse processes we performed a battery of structural and biochemical analyses. These studies show that RacA contains an N-terminal winged-helix-turn-helix module connected by a disordered region to a predicted coiled-coil domain. Structures capture RacA binding the DNA using distinct protein-protein interfaces and employing adjustable DNA docking modes. This unique DNA binding mechanism indicates how RacA can both specifically recognize its GC-rich centromere and also non-specifically bind the DNA. Adjacent RacA molecules within the protein-DNA structure interact leading to DNA compaction, suggesting a mechanism for axial filament formation. We also show that the RacA C-domain coiled coil directly contacts the coiled coil region of the polar protein DivIVA, which anchors RacA and hence the chromosome to the pole. Thus, our combined data reveal unique DNA binding properties by RacA and provide insight into the DNA remodeling and polar anchorage functions of the protein.
+
-
 
+
-
Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein.,Schumacher MA, Lee J, Zeng W Nucleic Acids Res. 2016 Apr 16. pii: gkw248. PMID:27085804<ref>PMID:27085804</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5i44" style="background-color:#fffaf0;"></div>
+
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Schumacher, M A]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Axial filament]]
+
[[Category: Large Structures]]
-
[[Category: B. subtili]]
+
[[Category: Synthetic construct]]
-
[[Category: Dna binding protein-dna complex]]
+
[[Category: Schumacher MA]]
-
[[Category: Dna segregation]]
+
-
[[Category: Raca]]
+
-
[[Category: Sporulation]]
+

Current revision

Structure of RacA-DNA complex; P21 form

PDB ID 5i44

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5i44"
Personal tools