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5ghk
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5ghk is ON HOLD until Paper Publication Authors: Kihira, K., Yamada, K., Yokomaku, K., Shinohara, R., Akiyama, M., Komatsu, T. Description: Crystal...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal Structure Analysis of Canine serum albumin== | |
| + | <StructureSection load='5ghk' size='340' side='right'caption='[[5ghk]], [[Resolution|resolution]] 3.20Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5ghk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Canis_lupus_familiaris Canis lupus familiaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GHK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GHK FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ghk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ghk OCA], [https://pdbe.org/5ghk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ghk RCSB], [https://www.ebi.ac.uk/pdbsum/5ghk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ghk ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ALBU_CANLF ALBU_CANLF] Binds water, Ca(2+), Na(+), K(+), fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood. Major zinc transporter in plasma, typically binds about 80% of all plasma zinc (By similarity). Major calcium and magnesium transporter in plasma, binds approximately 45% of circulating calcium and magnesium in plasma (By similarity). Potentially has more than two calcium-binding sites and might additionally bind calcium in a non-specific manner (By similarity). The shared binding site between zinc and calcium at residue Asp-273 suggests a crosstalk between zinc and calcium transport in the blood (By similarity). The rank order of affinity is zinc > calcium > magnesium (By similarity). Binds to the bacterial siderophore enterobactin and inhibits enterobactin-mediated iron uptake of E.coli from ferric transferrin, and may thereby limit the utilization of iron and growth of enteric bacteria such as E.coli (By similarity). Does not prevent iron uptake by the bacterial siderophore aerobactin (By similarity).[UniProtKB:P02768][UniProtKB:P02769] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | There is no blood bank for pet animals. Consequently, veterinarians themselves must obtain "blood" for transfusion therapy. Among the blood components, serum albumin and red blood cells (RBCs) are particularly important to save lives. This paper reports the synthesis, structure, and properties of artificial blood for the exclusive use of dogs. First, recombinant canine serum albumin (rCSA) was produced using genetic engineering with Pichia yeast. The proteins showed identical features to those of the native CSA derived from canine plasma. Furthermore, we ascertained the crystal structure of rCSA at 3.2 A resolution. Pure rCSA can be used widely for numerous clinical and pharmaceutical applications. Second, hemoglobin wrapped covalently with rCSA, hemoglobin-albumin cluster (Hb-rCSA3), was synthesized as an artificial O2-carrier for the RBC substitute. This cluster possesses satisfactorily negative surface net charge (pI = 4.7), which supports enfolding of the Hb core by rCSA shells. The anti-CSA antibody recognized the rCSA exterior quantitatively. The O2-binding affinity was high (P50 = 9 Torr) compared to that of the native Hb. The Hb-rCSA3 cluster is anticipated for use as an alternative material for RBC transfusion, and as an O2 therapeutic reagent that can be exploited in various veterinary medicine situations. | ||
| - | + | Artificial Blood for Dogs.,Yamada K, Yokomaku K, Kureishi M, Akiyama M, Kihira K, Komatsu T Sci Rep. 2016 Nov 10;6:36782. doi: 10.1038/srep36782. PMID:27830776<ref>PMID:27830776</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[ | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5ghk" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: Kihira | + | *[[Albumin 3D structures|Albumin 3D structures]] |
| - | [[Category: Komatsu | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Canis lupus familiaris]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Akiyama M]] | ||
| + | [[Category: Kihira K]] | ||
| + | [[Category: Komatsu T]] | ||
| + | [[Category: Kureishi M]] | ||
| + | [[Category: Shinohara R]] | ||
| + | [[Category: Yamada K]] | ||
| + | [[Category: Yokomaku K]] | ||
Current revision
Crystal Structure Analysis of Canine serum albumin
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