This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5dtk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (21:58, 28 June 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Fragments bound to the OXA-48 beta-lactamase: Compound 17==
==Fragments bound to the OXA-48 beta-lactamase: Compound 17==
-
<StructureSection load='5dtk' size='340' side='right' caption='[[5dtk]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='5dtk' size='340' side='right'caption='[[5dtk]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5dtk]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DTK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DTK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5dtk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DTK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DTK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5F3:3,5-DI(PYRIDIN-4-YL)BENZOIC+ACID'>5F3</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6000024&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5F3:3,5-DI(PYRIDIN-4-YL)BENZOIC+ACID'>5F3</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dva|5dva]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dtk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dtk OCA], [https://pdbe.org/5dtk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dtk RCSB], [https://www.ebi.ac.uk/pdbsum/5dtk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dtk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dtk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dtk OCA], [http://pdbe.org/5dtk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dtk RCSB], [http://www.ebi.ac.uk/pdbsum/5dtk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dtk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6XEC0_KLEPN Q6XEC0_KLEPN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5dtk" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5dtk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-lactamase]]
+
[[Category: Klebsiella pneumoniae]]
-
[[Category: Christopeit, T]]
+
[[Category: Large Structures]]
-
[[Category: Leiros, H K.S]]
+
[[Category: Christopeit T]]
-
[[Category: Lund, B A]]
+
[[Category: Leiros H-KS]]
-
[[Category: Complex]]
+
[[Category: Lund BA]]
-
[[Category: Fragment]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inhibitor]]
+
-
[[Category: Lactamase]]
+

Current revision

Fragments bound to the OXA-48 beta-lactamase: Compound 17

PDB ID 5dtk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5dtk"
Personal tools