This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ets

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:23, 12 July 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==S. aureus 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase complexed with AMPCPP and inhibitor at 1.95 angstrom resolution==
==S. aureus 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase complexed with AMPCPP and inhibitor at 1.95 angstrom resolution==
-
<StructureSection load='5ets' size='340' side='right' caption='[[5ets]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='5ets' size='340' side='right'caption='[[5ets]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ets]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ETS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ETS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ets]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ETS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ETS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5RX:2-AZANYL-8-[(4-CHLOROPHENYL)METHYLSULFANYL]-1,9-DIHYDROPURIN-6-ONE'>5RX</scene>, <scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5etn|5etn]], [[5etk|5etk]], [[5etl|5etl]], [[5etm|5etm]], [[5eto|5eto]], [[5etp|5etp]], [[5etq|5etq]], [[5etr|5etr]], [[5ett|5ett]], [[5etv|5etv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5RX:2-AZANYL-8-[(4-CHLOROPHENYL)METHYLSULFANYL]-1,9-DIHYDROPURIN-6-ONE'>5RX</scene>, <scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_diphosphokinase 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.3 2.7.6.3] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ets FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ets OCA], [https://pdbe.org/5ets PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ets RCSB], [https://www.ebi.ac.uk/pdbsum/5ets PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ets ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ets FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ets OCA], [http://pdbe.org/5ets PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ets RCSB], [http://www.ebi.ac.uk/pdbsum/5ets PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ets ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2G0Q5_STAA8 Q2G0Q5_STAA8]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5ets" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ets" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[HPPK 3D structures|HPPK 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase]]
+
[[Category: Large Structures]]
-
[[Category: Dennis, M L]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Peat, T S]]
+
[[Category: Dennis ML]]
-
[[Category: Swarbrick, J D]]
+
[[Category: Peat TS]]
-
[[Category: Ampcpp]]
+
[[Category: Swarbrick JD]]
-
[[Category: Complex]]
+
-
[[Category: Inhibitor]]
+
-
[[Category: Pyrophosphokinase]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+

Current revision

S. aureus 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase complexed with AMPCPP and inhibitor at 1.95 angstrom resolution

PDB ID 5ets

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ets"
Personal tools