5jq9

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'''Unreleased structure'''
 
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The entry 5jq9 is ON HOLD until Paper Publication
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==Yersinia pestis DHPS with pterine-sulfa conjugate Compound 16==
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<StructureSection load='5jq9' size='340' side='right'caption='[[5jq9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5jq9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_KIM_D27 Yersinia pestis KIM D27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JQ9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.101&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MB:4-{[(2-AMINO-4-OXO-3,4-DIHYDROPTERIDIN-6-YL)METHYL]AMINO}-N-(3,4-DIMETHYL-1,2-OXAZOL-5-YL)BENZENE-1-SULFONAMIDE'>6MB</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jq9 OCA], [https://pdbe.org/5jq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jq9 RCSB], [https://www.ebi.ac.uk/pdbsum/5jq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jq9 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A2S9PLG4_YERPE A0A2S9PLG4_YERPE] Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.[RuleBase:RU361205]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The sulfonamide class of antibiotics has been in continuous use for over 70years. They are thought to act by directly inhibiting dihydropteroate synthase (DHPS), and also acting as prodrugs that sequester pterin pools by forming dead end pterin-sulfonamide conjugates. In this study, eight pterin-sulfonamide conjugates were synthesized using a novel synthetic strategy and their biochemical and microbiological properties were investigated. The conjugates were shown to competitively inhibit DHPS, and inhibition was enhanced by the presence of pyrophosphate that is crucial to catalysis and is known to promote an ordering of the DHPS active site. The co-crystal structure of Yersinia pestis DHPS bound to one of the more potent conjugates revealed a mode of binding that is similar to that of the enzymatic product analog pteroic acid. The antimicrobial activities of the pterin-sulfonamide conjugates were measured against Escherichia coli in the presence and absence of folate precursors and dependent metabolites. These results show that the conjugates have appreciable antibacterial activity and act by an on target, anti-folate pathway mechanism rather than as simple dead end products.
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Authors: Wu, Y., White, S.W.
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Pterin-sulfa conjugates as dihydropteroate synthase inhibitors and antibacterial agents.,Zhao Y, Shadrick WR, Wallace MJ, Wu Y, Griffith EC, Qi J, Yun MK, White SW, Lee RE Bioorg Med Chem Lett. 2016 Aug 15;26(16):3950-4. doi: 10.1016/j.bmcl.2016.07.006., Epub 2016 Jul 4. PMID:27423480<ref>PMID:27423480</ref>
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Description: Yersinia pestis DHPS with pterine-sulfa conjugate Compound 16
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: White, S.W]]
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<div class="pdbe-citations 5jq9" style="background-color:#fffaf0;"></div>
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[[Category: Wu, Y]]
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==See Also==
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*[[Dihydropteroate synthase 3D structures|Dihydropteroate synthase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Yersinia pestis KIM D27]]
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[[Category: White SW]]
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[[Category: Wu Y]]

Current revision

Yersinia pestis DHPS with pterine-sulfa conjugate Compound 16

PDB ID 5jq9

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