5e3u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:27, 6 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of phosphatidylinositol-4-phosphate 5-kinase==
==Crystal structure of phosphatidylinositol-4-phosphate 5-kinase==
-
<StructureSection load='5e3u' size='340' side='right' caption='[[5e3u]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
+
<StructureSection load='5e3u' size='340' side='right'caption='[[5e3u]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5e3u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5E3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5E3U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5e3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5E3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5E3U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SE4:SELENATE+ION'>SE4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5e3s|5e3s]], [[5e3t|5e3t]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SE4:SELENATE+ION'>SE4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5e3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5e3u OCA], [http://pdbe.org/5e3u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5e3u RCSB], [http://www.ebi.ac.uk/pdbsum/5e3u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5e3u ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5e3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5e3u OCA], [https://pdbe.org/5e3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5e3u RCSB], [https://www.ebi.ac.uk/pdbsum/5e3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5e3u ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/Q503I3_DANRE Q503I3_DANRE]
-
The phosphatidylinositol phosphate kinase (PIPK) family of enzymes is primarily responsible for converting singly phosphorylated phosphatidylinositol derivatives to phosphatidylinositol bisphosphates. As such, these kinases are central to many signaling and membrane trafficking processes in the eukaryotic cell. The three types of phosphatidylinositol phosphate kinases are homologous in sequence but differ in catalytic activities and biological functions. Type I and type II kinases generate phosphatidylinositol 4,5-bisphosphate from phosphatidylinositol 4-phosphate and phosphatidylinositol 5-phosphate, respectively, whereas the type III kinase produces phosphatidylinositol 3,5-bisphosphate from phosphatidylinositol 3-phosphate. Based on crystallographic analysis of the zebrafish type I kinase PIP5Kalpha, we identified a structural motif unique to the kinase family that serves to recognize the monophosphate on the substrate. Our data indicate that the complex pattern of substrate recognition and phosphorylation results from the interplay between the monophosphate binding site and the specificity loop: the specificity loop functions to recognize different orientations of the inositol ring, whereas residues flanking the phosphate binding Arg244 determine whether phosphatidylinositol 3-phosphate is exclusively bound and phosphorylated at the 5-position. This work provides a thorough picture of how PIPKs achieve their exquisite substrate specificity.
+
-
 
+
-
Mechanism of substrate specificity of phosphatidylinositol phosphate kinases.,Muftuoglu Y, Xue Y, Gao X, Wu D, Ha Y Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8711-8716. Epub 2016 Jul 20. PMID:27439870<ref>PMID:27439870</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5e3u" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Muftuoglu, Y]]
+
[[Category: Danio rerio]]
-
[[Category: Kinase]]
+
[[Category: Large Structures]]
-
[[Category: Transferase]]
+
[[Category: Muftuoglu Y]]

Current revision

Crystal structure of phosphatidylinositol-4-phosphate 5-kinase

PDB ID 5e3u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools