5gor
From Proteopedia
(Difference between revisions)
m (Protected "5gor" [edit=sysop:move=sysop]) |
|||
(6 intermediate revisions not shown.) | |||
Line 1: | Line 1: | ||
- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120== | |
+ | <StructureSection load='5gor' size='340' side='right'caption='[[5gor]], [[Resolution|resolution]] 2.67Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5gor]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GOR FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.673Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gor OCA], [https://pdbe.org/5gor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gor RCSB], [https://www.ebi.ac.uk/pdbsum/5gor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gor ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q8YWS9_NOSS1 Q8YWS9_NOSS1] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Invertases catalyze the hydrolysis of sucrose to glucose and fructose, thereby playing a key role in primary metabolism and plant development. According to the optimum pH, invertases are classified into acid invertases (Ac-Invs) and alkaline/neutral invertases (A/N-Invs), which share no sequence homology. Compared with Ac-Invs that have been extensively studied, the structure and catalytic mechanism of A/N-Invs remain unknown. Here we report the crystal structures of Anabaena alkaline invertase InvA, which was proposed to be the ancestor of modern plant A/N-Invs. These structures are the first in the GH100 family. InvA exists as a hexamer in both crystal and solution. Each subunit consists of an (alpha/alpha)6 barrel core structure in addition to an insertion of three helices. A couple of structures in complex with the substrate or products enabled us to assign the subsites -1 and +1 specifically binding glucose and fructose, respectively. Structural comparison combined with enzymatic assays indicated that Asp-188 and Glu-414 are putative catalytic residues. Further analysis of the substrate binding pocket demonstrated that InvA possesses a stringent substrate specificity toward the alpha1,2-glycosidic bond of sucrose. Together, we suggest that InvA and homologs represent a novel family of glucosidases. | ||
- | + | Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase.,Xie J, Cai K, Hu HX, Jiang YL, Yang F, Hu PF, Cao DD, Li WF, Chen Y, Zhou CZ J Biol Chem. 2016 Dec 2;291(49):25667-25677. Epub 2016 Oct 24. PMID:27777307<ref>PMID:27777307</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[ | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5gor" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: Cai | + | ==See Also== |
- | [[Category: Hu | + | *[[Invertase|Invertase]] |
- | [[Category: Hu | + | == References == |
- | [[Category: Jiang | + | <references/> |
- | [[Category: Xie | + | __TOC__ |
- | [[Category: Yang | + | </StructureSection> |
+ | [[Category: Large Structures]] | ||
+ | [[Category: Nostoc sp. PCC 7120 = FACHB-418]] | ||
+ | [[Category: Cai K]] | ||
+ | [[Category: Chen Y]] | ||
+ | [[Category: Hu HX]] | ||
+ | [[Category: Hu PF]] | ||
+ | [[Category: Jiang YL]] | ||
+ | [[Category: Xie J]] | ||
+ | [[Category: Yang F]] | ||
+ | [[Category: Zhou CZ]] |
Current revision
Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120
|
Categories: Large Structures | Nostoc sp. PCC 7120 = FACHB-418 | Cai K | Chen Y | Hu HX | Hu PF | Jiang YL | Xie J | Yang F | Zhou CZ