5k0w

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==Crystal structure of the metallo-beta-lactamase GOB-18 from Elizabethkingia meningoseptica==
==Crystal structure of the metallo-beta-lactamase GOB-18 from Elizabethkingia meningoseptica==
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<StructureSection load='5k0w' size='340' side='right' caption='[[5k0w]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
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<StructureSection load='5k0w' size='340' side='right'caption='[[5k0w]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5k0w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K0W FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5k0w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Elizabethkingia_meningoseptica Elizabethkingia meningoseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K0W FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.61&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k0w OCA], [http://pdbe.org/5k0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k0w RCSB], [http://www.ebi.ac.uk/pdbsum/5k0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k0w ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k0w OCA], [https://pdbe.org/5k0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k0w RCSB], [https://www.ebi.ac.uk/pdbsum/5k0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k0w ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q4JRB6_ELIME Q4JRB6_ELIME]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Metallo-beta-lactamases (MBLs) are broad spectrum, Zn(II) dependent lactamases able to confer resistance to virtually every beta-lactam antibiotic currently available. The large diversity of active site structures and metal content among MBLs from different sources has limited the design of a pan-MBL inhibitor. GOB-18 is a divergent MBL from subclass B3, expressed by the opportunistic Gram-negative pathogen Elizabethkingia meningoseptica This MBL is atypical since several residues conserved in B3 enzymes (such as a metal ligand His) are substituted in GOB enzymes. Here we report the crystal structure of the periplasmic di-Zn(II) form of GOB-18. This enzyme displays a unique active site structure, with residue Gln116 coordinating the Zn1 ion through its terminal amide moiety, replacing a ubiquitous His residue. This situation contrasts with that of B2 MBLs, where an equivalent His116Asn substitution leads to a di-Zn(II) inactive species. Instead, both the mono- and di-Zn(II) forms of GOB-18 are active against penicillins, cephalosporins and carbapenems. In silico docking and molecular dynamics simulations indicate that residue Met221 is not involved in substrate binding, in contrast with Ser221, otherwise conserved in most B3 enzymes. These distinctive features are conserved in recently reported GOB orthologues in environmental bacteria. These findings provide valuable information for inhibitor design, and also posit that GOB enzymes might have alternative functions.
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CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE GOB IN THE PERIPLASMIC DI-ZINC FORM REVEALS AN UNUSUAL METAL SITE.,Moran-Barrio J, Lisa MN, Larrieux N, Drusin SI, Viale AM, Moreno DM, Buschiazzo A, Vila AJ Antimicrob Agents Chemother. 2016 Jul 25. pii: AAC.01067-16. PMID:27458232<ref>PMID:27458232</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5k0w" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Buschiazzo, A]]
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[[Category: Elizabethkingia meningoseptica]]
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[[Category: Larrieux, N]]
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[[Category: Large Structures]]
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[[Category: Lisa, M N]]
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[[Category: Buschiazzo A]]
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[[Category: Moran-Barrio, J]]
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[[Category: Larrieux N]]
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[[Category: Vila, A J]]
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[[Category: Lisa MN]]
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[[Category: B3 lactamase]]
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[[Category: Moran-Barrio J]]
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[[Category: Hydrolase]]
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[[Category: Vila AJ]]
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[[Category: Hydrolysis of beta-lactam antibiotic]]
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[[Category: Metallo-beta-lactamase]]
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[[Category: Zinc hydrolase]]
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Current revision

Crystal structure of the metallo-beta-lactamase GOB-18 from Elizabethkingia meningoseptica

PDB ID 5k0w

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