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| | ==Crystal structure of polymerase basic protein 2 E538-R753 from Influenza A virus A/Yokohama/2017/03 H3N2== | | ==Crystal structure of polymerase basic protein 2 E538-R753 from Influenza A virus A/Yokohama/2017/03 H3N2== |
| - | <StructureSection load='3r2v' size='340' side='right' caption='[[3r2v]], [[Resolution|resolution]] 1.30Å' scene=''> | + | <StructureSection load='3r2v' size='340' side='right'caption='[[3r2v]], [[Resolution|resolution]] 1.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3r2v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_h3n2 Influenza a virus h3n2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R2V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R2V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3r2v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_H3N2 Influenza A virus H3N2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R2V FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BO3:BORIC+ACID'>BO3</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3khw|3khw]], [[3kc6|3kc6]], [[3l56|3l56]], [[2vy6|2vy6]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BO3:BORIC+ACID'>BO3</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PB2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=41857 Influenza A virus H3N2])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r2v OCA], [https://pdbe.org/3r2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r2v RCSB], [https://www.ebi.ac.uk/pdbsum/3r2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r2v ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r2v OCA], [http://pdbe.org/3r2v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3r2v RCSB], [http://www.ebi.ac.uk/pdbsum/3r2v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3r2v ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| - | <div style="background-color:#fffaf0;">
| + | == Function == |
| - | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/F2Z275_9INFA F2Z275_9INFA] |
| - | The Protein Maker is an automated purification system developed by Emerald BioSystems for high-throughput parallel purification of proteins and antibodies. This instrument allows multiple load, wash and elution buffers to be used in parallel along independent lines for up to 24 individual samples. To demonstrate its utility, its use in the purification of five recombinant PB2 C-terminal domains from various subtypes of the influenza A virus is described. Three of these constructs crystallized and one diffracted X-rays to sufficient resolution for structure determination and deposition in the Protein Data Bank. Methods for screening lysis buffers for a cytochrome P450 from a pathogenic fungus prior to upscaling expression and purification are also described. The Protein Maker has become a valuable asset within the Seattle Structural Genomics Center for Infectious Disease (SSGCID) and hence is a potentially valuable tool for a variety of high-throughput protein-purification applications.
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| - | The Protein Maker: an automated system for high-throughput parallel purification.,Smith ER, Begley DW, Anderson V, Raymond AC, Haffner TE, Robinson JI, Edwards TE, Duncan N, Gerdts CJ, Mixon MB, Nollert P, Staker BL, Stewart LJ Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1015-21. Epub 2011 Aug 13. PMID:21904043<ref>PMID:21904043</ref>
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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| - | </div>
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| - | <div class="pdbe-citations 3r2v" style="background-color:#fffaf0;"></div>
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| - | == References ==
| + | |
| - | <references/>
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Influenza a virus h3n2]] | + | [[Category: Influenza A virus H3N2]] |
| - | [[Category: Structural genomic]] | + | [[Category: Large Structures]] |
| - | [[Category: 2003 avian flu outbreak]]
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| - | [[Category: Flu]]
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| - | [[Category: H1n1]]
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| - | [[Category: H3n2]]
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| - | [[Category: H5n1]]
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| - | [[Category: Influenza]]
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| - | [[Category: Pb2]]
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| - | [[Category: Polymerase basic]]
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| - | [[Category: Ssgcid]]
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| - | [[Category: Viral protein]]
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| - | [[Category: Virus]]
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