This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kmc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 16 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1kmc.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the Caspase-7 / XIAP-BIR2 Complex==
-
|PDB= 1kmc |SIZE=350|CAPTION= <scene name='initialview01'>1kmc</scene>, resolution 2.9&Aring;
+
<StructureSection load='1kmc' size='340' side='right'caption='[[1kmc]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1kmc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KMC FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kmc OCA], [https://pdbe.org/1kmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kmc RCSB], [https://www.ebi.ac.uk/pdbsum/1kmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kmc ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=[[1i4o|1I4O]], [[1i51|1I51]], [[1i3o|1I3O]]
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kmc OCA], [http://www.ebi.ac.uk/pdbsum/1kmc PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1kmc RCSB]</span>
+
[https://www.uniprot.org/uniprot/CASP7_HUMAN CASP7_HUMAN] Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves and activates sterol regulatory element binding proteins (SREBPs). Proteolytically cleaves poly(ADP-ribose) polymerase (PARP) at a '216-Asp-|-Gly-217' bond. Overexpression promotes programmed cell death.
-
}}
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/1kmc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kmc ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of the Caspase-7 / XIAP-BIR2 Complex'''
+
==See Also==
-
 
+
*[[Caspase 3D structures|Caspase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1KMC is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KMC OCA].
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Bode, W.]]
+
[[Category: Bode W]]
-
[[Category: Riedl, S J.]]
+
[[Category: Riedl SJ]]
-
[[Category: Salvesen, G S.]]
+
[[Category: Salvesen GS]]
-
[[Category: apoptosis]]
+
-
[[Category: bir]]
+
-
[[Category: caspase]]
+
-
[[Category: complex]]
+
-
[[Category: iap]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:50:33 2008''
+

Current revision

Crystal Structure of the Caspase-7 / XIAP-BIR2 Complex

PDB ID 1kmc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools