This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4icn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:13, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Dihydrodipicolinate synthase from shewanella benthica==
==Dihydrodipicolinate synthase from shewanella benthica==
-
<StructureSection load='4icn' size='340' side='right' caption='[[4icn]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='4icn' size='340' side='right'caption='[[4icn]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4icn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43992 Atcc 43992]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ICN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ICN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4icn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_benthica Shewanella benthica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ICN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ICN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DAPA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=43661 ATCC 43992])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4icn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4icn OCA], [http://pdbe.org/4icn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4icn RCSB], [http://www.ebi.ac.uk/pdbsum/4icn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4icn ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4icn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4icn OCA], [https://pdbe.org/4icn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4icn RCSB], [https://www.ebi.ac.uk/pdbsum/4icn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4icn ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A9DKW4_9GAMM A9DKW4_9GAMM] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).[HAMAP-Rule:MF_00418][SAAS:SAAS00086388]
==See Also==
==See Also==
Line 13: Line 15:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43992]]
+
[[Category: Large Structures]]
-
[[Category: Dogovski, C]]
+
[[Category: Shewanella benthica]]
-
[[Category: Parker, M W]]
+
[[Category: Dogovski C]]
-
[[Category: Paxman, J J]]
+
[[Category: Parker MW]]
-
[[Category: Perugini, M A]]
+
[[Category: Paxman JJ]]
-
[[Category: Wubben, J M]]
+
[[Category: Perugini MA]]
-
[[Category: Dihydrodipicolinate synthase]]
+
[[Category: Wubben JM]]
-
[[Category: Lyase]]
+
-
[[Category: Lysine biosynthesis]]
+
-
[[Category: Tim barrel]]
+

Current revision

Dihydrodipicolinate synthase from shewanella benthica

PDB ID 4icn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools