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| ==Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with Pantothenol== | | ==Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with Pantothenol== |
- | <StructureSection load='3avp' size='340' side='right' caption='[[3avp]], [[Resolution|resolution]] 2.60Å' scene=''> | + | <StructureSection load='3avp' size='340' side='right'caption='[[3avp]], [[Resolution|resolution]] 2.60Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3avp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AVP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AVP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3avp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AVP FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MV2:(2S)-2,4-DIHYDROXY-N-(3-HYDROXYPROPYL)-3,3-DIMETHYLBUTANAMIDE'>MV2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aez|3aez]], [[3af0|3af0]], [[3af1|3af1]], [[3af2|3af2]], [[3af3|3af3]], [[3af4|3af4]], [[3avo|3avo]], [[3avq|3avq]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MV2:(2S)-2,4-DIHYDROXY-N-(3-HYDROXYPROPYL)-3,3-DIMETHYLBUTANAMIDE'>MV2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">coaA, Rv1092c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3avp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3avp OCA], [https://pdbe.org/3avp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3avp RCSB], [https://www.ebi.ac.uk/pdbsum/3avp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3avp ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3avp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3avp OCA], [http://pdbe.org/3avp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3avp RCSB], [http://www.ebi.ac.uk/pdbsum/3avp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3avp ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/COAA_MYCTU COAA_MYCTU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Pantothenate kinase|Pantothenate kinase]] | + | *[[Pantothenate kinase 3D structures|Pantothenate kinase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Pantothenate kinase]] | + | [[Category: Large Structures]] |
- | [[Category: Abhinav, K V]] | + | [[Category: Mycobacterium tuberculosis]] |
- | [[Category: Chetnani, B]] | + | [[Category: Abhinav KV]] |
- | [[Category: Chhibber, M]] | + | [[Category: Chetnani B]] |
- | [[Category: Kumar, P]] | + | [[Category: Chhibber M]] |
- | [[Category: Surolia, A]] | + | [[Category: Kumar P]] |
- | [[Category: Vijayan, M]] | + | [[Category: Surolia A]] |
- | [[Category: Coa biosynthesis]]
| + | [[Category: Vijayan M]] |
- | [[Category: Homodimer]]
| + | |
- | [[Category: Nucleotide binding]]
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- | [[Category: Transferase-transferase inhibitor complex]]
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| Structural highlights
Function
COAA_MYCTU
Publication Abstract from PubMed
Previous studies of complexes of Mycobacterium tuberculosis PanK (MtPanK) with nucleotide diphosphates and nonhydrolysable analogues of nucleoside triphosphates in the presence or the absence of pantothenate established that the enzyme has dual specificity for ATP and GTP, revealed the unusual movement of ligands during enzyme action and provided information on the effect of pantothenate on the location and conformation of the nucleotides at the beginning and the end of enzyme action. The X-ray analyses of the binary complexes of MtPanK with pantothenate, pantothenol and N-nonylpantothenamide reported here demonstrate that in the absence of nucleotide these ligands occupy, with a somewhat open conformation, a location similar to that occupied by phosphopantothenate in the `end' complexes, which differs distinctly from the location of pantothenate in the closed conformation in the ternary `initiation' complexes. The conformation and the location of the nucleotide were also different in the initiation and end complexes. An invariant arginine appears to play a critical role in the movement of ligands that takes place during enzyme action. The work presented here completes the description of the locations and conformations of nucleoside diphosphates and triphosphates and pantothenate in different binary and ternary complexes, and suggests a structural rationale for the movement of ligands during enzyme action. The present investigation also suggests that N-alkylpantothenamides could be phosphorylated by the enzyme in the same manner as pantothenate.
Location and conformation of pantothenate and its derivatives in Mycobacterium tuberculosis pantothenate kinase: insights into enzyme action.,Chetnani B, Kumar P, Abhinav KV, Chhibber M, Surolia A, Vijayan M Acta Crystallogr D Biol Crystallogr. 2011 Sep;67(Pt 9):774-83. doi:, 10.1107/S0907444911024462. Epub 2011 Aug 9. PMID:21904030[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Chetnani B, Kumar P, Abhinav KV, Chhibber M, Surolia A, Vijayan M. Location and conformation of pantothenate and its derivatives in Mycobacterium tuberculosis pantothenate kinase: insights into enzyme action. Acta Crystallogr D Biol Crystallogr. 2011 Sep;67(Pt 9):774-83. doi:, 10.1107/S0907444911024462. Epub 2011 Aug 9. PMID:21904030 doi:10.1107/S0907444911024462
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