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1kqo
From Proteopedia
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| - | [[Image:1kqo.jpg|left|200px]] | ||
| - | + | ==Crystal structure of NMN/NaMN adenylyltransferase complexed with deamido-NAD== | |
| - | + | <StructureSection load='1kqo' size='340' side='right'caption='[[1kqo]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1kqo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KQO FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DND:NICOTINIC+ACID+ADENINE+DINUCLEOTIDE'>DND</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kqo OCA], [https://pdbe.org/1kqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kqo RCSB], [https://www.ebi.ac.uk/pdbsum/1kqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kqo ProSAT]</span></td></tr> | |
| - | | | + | </table> |
| - | | | + | == Disease == |
| - | + | [https://www.uniprot.org/uniprot/NMNA1_HUMAN NMNA1_HUMAN] Defects in NMNAT1 are the cause of Leber congenital amaurosis 9 (LCA9) [MIM:[https://omim.org/entry/608553 608553]. A severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus.<ref>PMID:22842230</ref> <ref>PMID:22842231</ref> <ref>PMID:22842229</ref> <ref>PMID:22842227</ref> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/NMNA1_HUMAN NMNA1_HUMAN] Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate with the same efficiency. Can use triazofurin monophosphate (TrMP) as substrate. Also catalyzes the reverse reaction, i.e. the pyrophosphorolytic cleavage of NAD(+). For the pyrophosphorolytic activity, prefers NAD(+) and NAAD as substrates and degrades NADH, nicotinic acid adenine dinucleotide phosphate (NHD) and nicotinamide guanine dinucleotide (NGD) less effectively. Fails to cleave phosphorylated dinucleotides NADP(+), NADPH and NAADP(+). Protects against axonal degeneration following mechanical or toxic insults.<ref>PMID:17402747</ref> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kq/1kqo_consurf.spt"</scriptWhenChecked> | |
| - | == | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | == | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kqo ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Binns DD]] | |
| - | [[Category: Binns | + | [[Category: Grishin NV]] |
| - | [[Category: Grishin | + | [[Category: Kurnasov O]] |
| - | [[Category: Kurnasov | + | [[Category: Marquez VE]] |
| - | [[Category: Marquez | + | [[Category: Osterman AL]] |
| - | [[Category: Osterman | + | [[Category: Tomchick DR]] |
| - | [[Category: Tomchick | + | [[Category: Zhang H]] |
| - | [[Category: Zhang | + | [[Category: Zhou T]] |
| - | [[Category: Zhou | + | |
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Current revision
Crystal structure of NMN/NaMN adenylyltransferase complexed with deamido-NAD
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Categories: Homo sapiens | Large Structures | Binns DD | Grishin NV | Kurnasov O | Marquez VE | Osterman AL | Tomchick DR | Zhang H | Zhou T

