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| | ==Crystal structure of P. aeruginosa MurB in complex with NADP+== | | ==Crystal structure of P. aeruginosa MurB in complex with NADP+== |
| - | <StructureSection load='4jb1' size='340' side='right' caption='[[4jb1]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='4jb1' size='340' side='right'caption='[[4jb1]], [[Resolution|resolution]] 2.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4jb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JB1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4jb1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JB1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JB1 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4jay|4jay]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">murB, PA2977 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jb1 OCA], [https://pdbe.org/4jb1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jb1 RCSB], [https://www.ebi.ac.uk/pdbsum/4jb1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jb1 ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-N-acetylmuramate_dehydrogenase UDP-N-acetylmuramate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.98 1.3.1.98] </span></td></tr> | + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jb1 OCA], [http://pdbe.org/4jb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jb1 RCSB], [http://www.ebi.ac.uk/pdbsum/4jb1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jb1 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/MURB_PSEAE MURB_PSEAE]] Cell wall formation (By similarity). | + | [https://www.uniprot.org/uniprot/MURB_PSEAE MURB_PSEAE] Cell wall formation (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Pseae]] | + | [[Category: Large Structures]] |
| - | [[Category: UDP-N-acetylmuramate dehydrogenase]] | + | [[Category: Pseudomonas aeruginosa PAO1]] |
| - | [[Category: Chen, M W]] | + | [[Category: Chen MW]] |
| - | [[Category: Lescar, J]] | + | [[Category: Lescar J]] |
| - | [[Category: Lohkamp, B]] | + | [[Category: Lohkamp B]] |
| - | [[Category: Schneider, G]] | + | [[Category: Schneider G]] |
| - | [[Category: Schnell, R]] | + | [[Category: Schnell R]] |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
MURB_PSEAE Cell wall formation (By similarity).
Publication Abstract from PubMed
Biosynthesis of UDP-N-acetylmuramic acid in bacteria is a committed step towards peptidoglycan production. In an NADPH- and FAD-dependent reaction, the UDP-N-acetylglucosamine-enolpyruvate reductase (MurB) reduces UDP-N-acetylglucosamine-enolpyruvate to UDP-N-acetylmuramic acid. We determined the three-dimensional structures of the ternary complex of Pseudomonas aeruginosa MurB with FAD and NADP+ in two crystal forms to resolutions of 2.2 and 2.1 A, respectively, to investigate the structural basis of the first half-reaction, hydride transfer from NADPH to FAD. The nicotinamide ring of NADP+ stacks against the si face of the isoalloxazine ring of FAD, suggesting an unusual mode of hydride transfer to flavin. Comparison with the structure of the Escherichia coli MurB complex with UDP-N-acetylglucosamine-enolpyruvate shows that both substrates share the binding site located between two lobes of the substrate-binding domain III, consistent with a ping pong mechanism with sequential substrate binding. The nicotinamide and the enolpyruvyl moieties are strikingly well-aligned upon superimposition, both positioned for hydride transfer to and from FAD. However, flexibility of the substrate channel allows the non-reactive parts of the two substrates to bind in different conformations. A potassium ion in the active site may assist in substrate orientation and binding. These structural models should help in structure-aided drug design against MurB, which is essential for cell wall biogenesis and hence bacterial survival.
Substrate Channel Flexibility in MurB Accommodates Two Distinct Substrates.,Chen MW, Lohkamp B, Schnell R, Lescar J, Schneider G PLoS One. 2013 Jun 21;8(6):e66936. Print 2013. PMID:23805286[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chen MW, Lohkamp B, Schnell R, Lescar J, Schneider G. Substrate Channel Flexibility in MurB Accommodates Two Distinct Substrates. PLoS One. 2013 Jun 21;8(6):e66936. Print 2013. PMID:23805286 doi:10.1371/journal.pone.0066936
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