This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ofp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:12, 20 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal Structure of SYG-2 D3-D4==
==Crystal Structure of SYG-2 D3-D4==
-
<StructureSection load='4ofp' size='340' side='right' caption='[[4ofp]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='4ofp' size='340' side='right'caption='[[4ofp]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ofp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Caeel Caeel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OFP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OFP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ofp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OFP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OFP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4of0|4of0]], [[4of3|4of3]], [[4of6|4of6]], [[4of7|4of7]], [[4of8|4of8]], [[4ofd|4ofd]], [[4ofi|4ofi]], [[4ofk|4ofk]], [[4ofy|4ofy]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C26G2.1, CELE_C26G2.1, syg-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 CAEEL])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ofp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ofp OCA], [https://pdbe.org/4ofp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ofp RCSB], [https://www.ebi.ac.uk/pdbsum/4ofp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ofp ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ofp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ofp OCA], [http://pdbe.org/4ofp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ofp RCSB], [http://www.ebi.ac.uk/pdbsum/4ofp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ofp ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYG2_CAEEL SYG2_CAEEL] Cell adhesion protein (PubMed:15035988). Determines synapse formation (PubMed:15035988, PubMed:21858180, PubMed:24485456). Required for correct localization of syg-1 at synaptic sites (PubMed:15035988).<ref>PMID:15035988</ref> <ref>PMID:21858180</ref> <ref>PMID:24485456</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Caeel]]
+
[[Category: Caenorhabditis elegans]]
-
[[Category: Garcia, K C]]
+
[[Category: Large Structures]]
-
[[Category: Ozkan, E]]
+
[[Category: Garcia KC]]
-
[[Category: Cell adhesion]]
+
[[Category: Ozkan E]]
-
[[Category: Extracellular]]
+
-
[[Category: Immunoglobulin superfamily]]
+
-
[[Category: Membrane]]
+
-
[[Category: N-linked glycosylation]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Signaling protein]]
+
-
[[Category: Synaptogenesis]]
+

Current revision

Crystal Structure of SYG-2 D3-D4

PDB ID 4ofp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools