This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lf6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:36, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of HIV epitope-scaffold 4E10_1XIZA_S0_001_N==
==Crystal structure of HIV epitope-scaffold 4E10_1XIZA_S0_001_N==
-
<StructureSection load='3lf6' size='340' side='right' caption='[[3lf6]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3lf6' size='340' side='right'caption='[[3lf6]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3lf6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LF6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LF6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3lf6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LF6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lef|3lef]], [[3lf9|3lf9]], [[3lg7|3lg7]], [[3lh2|3lh2]], [[3lhp|3lhp]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lf6 OCA], [http://pdbe.org/3lf6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lf6 RCSB], [http://www.ebi.ac.uk/pdbsum/3lf6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lf6 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lf6 OCA], [https://pdbe.org/3lf6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lf6 RCSB], [https://www.ebi.ac.uk/pdbsum/3lf6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lf6 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lf/3lf6_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lf/3lf6_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 31:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Synthetic construct sequences]]
+
[[Category: Large Structures]]
-
[[Category: Holmes, M A]]
+
[[Category: Synthetic construct]]
-
[[Category: Epitope-scaffold]]
+
[[Category: Holmes MA]]
-
[[Category: Immune system]]
+

Current revision

Crystal structure of HIV epitope-scaffold 4E10_1XIZA_S0_001_N

PDB ID 3lf6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3lf6"
Personal tools