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| ==Crystal Structure of the Prolyl Acyl Carrier Protein Oxidase AnaB== | | ==Crystal Structure of the Prolyl Acyl Carrier Protein Oxidase AnaB== |
- | <StructureSection load='4irn' size='340' side='right' caption='[[4irn]], [[Resolution|resolution]] 2.80Å' scene=''> | + | <StructureSection load='4irn' size='340' side='right'caption='[[4irn]], [[Resolution|resolution]] 2.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4irn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyngbya_kuetzingii_utex_'b_1547' Lyngbya kuetzingii utex 'b 1547']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IRN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IRN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4irn]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Kamptonema_sp._PCC_6506 Kamptonema sp. PCC 6506]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IRN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IRN FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">anaB, OSCI_4070008 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272129 Lyngbya kuetzingii UTEX 'B 1547'])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4irn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4irn OCA], [http://pdbe.org/4irn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4irn RCSB], [http://www.ebi.ac.uk/pdbsum/4irn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4irn ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4irn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4irn OCA], [https://pdbe.org/4irn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4irn RCSB], [https://www.ebi.ac.uk/pdbsum/4irn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4irn ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/C4NCB7_9CYAN C4NCB7_9CYAN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Lyngbya kuetzingii utex 'b 1547']] | + | [[Category: Kamptonema sp. PCC 6506]] |
- | [[Category: Mann, S]] | + | [[Category: Large Structures]] |
- | [[Category: Mejean, A]] | + | [[Category: Mann S]] |
- | [[Category: Moncoq, K]] | + | [[Category: Mejean A]] |
- | [[Category: Ploux, O]] | + | [[Category: Moncoq K]] |
- | [[Category: Regad, L]] | + | [[Category: Ploux O]] |
- | [[Category: Acyl coa dehydrogenase fold]]
| + | [[Category: Regad L]] |
- | [[Category: Acyl-acp oxidase]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
C4NCB7_9CYAN
Publication Abstract from PubMed
Anatoxin-a and homoanatoxin-a are two potent cyanobacterial neurotoxins biosynthesized from L-proline by a short pathway involving polyketide synthases. Proline is first loaded onto AnaD, an acyl carrier protein, and prolyl-AnaD is then oxidized to 1-pyrroline-5-carboxyl-AnaD by a flavoprotein, AnaB. Three polyketide synthases then transform this imine into anatoxin-a or homoanatoxin-a. AnaB was crystallized in its holo form and its three-dimensional structure was determined by X-ray diffraction at 2.8 A resolution. AnaB is a homotetramer and its fold is very similar to that of the acyl-CoA dehydrogenases (ACADs). The active-site base of AnaB, Glu244, superimposed very well with that of human isovaleryl-CoA dehydrogenase, confirming previous site-directed mutagenesis experiments and mechanistic proposals. The substrate-binding site of AnaB is small and is likely to be fitted for the pyrrolidine ring of proline. However, in contrast to ACADs, which use an electron-transport protein, AnaB uses molecular oxygen as the electron acceptor, as in acyl-CoA oxidases. Calculation of the solvent-accessible surface area around the FAD in AnaB and in several homologues showed that it is significantly larger in AnaB than in its homologues. A protonated histidine near the FAD in AnaB is likely to participate in oxygen activation. Furthermore, an array of water molecules detected in the AnaB structure suggests a possible path for molecular oxygen towards FAD. This is consistent with AnaB being an oxidase rather than a dehydrogenase. The structure of AnaB is the first to be described for a prolyl-ACP oxidase and it will contribute to defining the structural basis responsible for oxygen reactivity in flavoenzymes.
Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a.,Moncoq K, Regad L, Mann S, Mejean A, Ploux O Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2340-52. doi:, 10.1107/S0907444913021859. Epub 2013 Nov 19. PMID:24311576[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Moncoq K, Regad L, Mann S, Mejean A, Ploux O. Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a. Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2340-52. doi:, 10.1107/S0907444913021859. Epub 2013 Nov 19. PMID:24311576 doi:http://dx.doi.org/10.1107/S0907444913021859
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