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| | ==Crystal Structure of 3E5 IgG3 FAB from mus musculus== | | ==Crystal Structure of 3E5 IgG3 FAB from mus musculus== |
| - | <StructureSection load='4hdi' size='340' side='right' caption='[[4hdi]], [[Resolution|resolution]] 2.45Å' scene=''> | + | <StructureSection load='4hdi' size='340' side='right'caption='[[4hdi]], [[Resolution|resolution]] 2.45Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4hdi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HDI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HDI FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4hdi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HDI FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IgG1 anti-TS1 VL, Gm16939 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.449Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hdi OCA], [http://pdbe.org/4hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hdi RCSB], [http://www.ebi.ac.uk/pdbsum/4hdi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hdi ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hdi OCA], [https://pdbe.org/4hdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hdi RCSB], [https://www.ebi.ac.uk/pdbsum/4hdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hdi ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A2NHM3_MOUSE A2NHM3_MOUSE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Lk3 transgenic mice]] | + | [[Category: Large Structures]] |
| - | [[Category: Casadevall, A]] | + | [[Category: Mus musculus]] |
| - | [[Category: Cordero, R J.B]] | + | [[Category: Casadevall A]] |
| - | [[Category: Cowburn, D]] | + | [[Category: Cordero RJB]] |
| - | [[Category: Eryilmaz, E]] | + | [[Category: Cowburn D]] |
| - | [[Category: Janda, A]] | + | [[Category: Eryilmaz E]] |
| - | [[Category: Kim, J]] | + | [[Category: Janda A]] |
| - | [[Category: Fab]]
| + | [[Category: Kim J]] |
| - | [[Category: Igg]]
| + | |
| - | [[Category: Immune system]]
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| Structural highlights
Function
A2NHM3_MOUSE
Publication Abstract from PubMed
Until relatively recently the immunoglobulin molecule was viewed as composed of two independent domains comprised of the variable (V) and constant (C) regions. However, recent work has established that the C region mediates allosteric changes in the V region that can influence specificity and affinity. To further explore cross-domain interrelationship in murine IgG structure we carried out solution small angle X-ray scattering (SAXS) measurements for four V region identical IgG isotypes. SAXS analysis revealed elongated Y-shaped structures in solution with significantly different, isotype-dependent domain orientations. To further explore local C region effects on the V region, the IgG3 Fab crystal structure from the same family was determined to 2.45A resolution. The IgG3 Fab crystal structure differs from a closely related previously solved IgG1 Fab revealing significant structural differences, which may account for isotype-related specificity differences in V region identical Abs. Among the four murine isotypes, IgG3 was the most different in solution with regards to overall structure as well as aggregate formation in solution suggesting that the greater apparent affinity of this isotype resulted from polyvalent complexes with enhanced avidity. Our results provide additional evidence that Ig V and C domains influence each other structurally and suggest that V region structure can have significant effects on overall Ig structure.
Global structures of IgG isotypes expressing identical variable regions.,Eryilmaz E, Janda A, Kim J, Cordero RJ, Cowburn D, Casadevall A Mol Immunol. 2013 Jul 31;56(4):588-598. doi: 10.1016/j.molimm.2013.06.006. PMID:23911417[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Eryilmaz E, Janda A, Kim J, Cordero RJ, Cowburn D, Casadevall A. Global structures of IgG isotypes expressing identical variable regions. Mol Immunol. 2013 Jul 31;56(4):588-598. doi: 10.1016/j.molimm.2013.06.006. PMID:23911417 doi:10.1016/j.molimm.2013.06.006
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