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| ==Crystal structure of antibody 93F3 unstable variant== | | ==Crystal structure of antibody 93F3 unstable variant== |
- | <StructureSection load='4j1u' size='340' side='right' caption='[[4j1u]], [[Resolution|resolution]] 2.58Å' scene=''> | + | <StructureSection load='4j1u' size='340' side='right'caption='[[4j1u]], [[Resolution|resolution]] 2.58Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4j1u]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J1U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4J1U FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4j1u]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J1U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4J1U FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4j1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j1u OCA], [http://pdbe.org/4j1u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4j1u RCSB], [http://www.ebi.ac.uk/pdbsum/4j1u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4j1u ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.58Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4j1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j1u OCA], [https://pdbe.org/4j1u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4j1u RCSB], [https://www.ebi.ac.uk/pdbsum/4j1u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4j1u ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| ==See Also== | | ==See Also== |
- | *[[3D structures of antibody|3D structures of antibody]] | + | *[[Antibody 3D structures|Antibody 3D structures]] |
| + | *[[Sandbox 20009|Sandbox 20009]] |
| + | *[[3D structures of non-human antibody|3D structures of non-human antibody]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Lk3 transgenic mice]] | + | [[Category: Large Structures]] |
- | [[Category: Wang, F]] | + | [[Category: Mus musculus]] |
- | [[Category: Antibody maturation]] | + | [[Category: Wang F]] |
- | [[Category: Antibody stability]]
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- | [[Category: Clonal selection]]
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- | [[Category: Immune system]]
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| Structural highlights
Publication Abstract from PubMed
Somatic hypermutation and clonal selection lead to B cells expressing high-affinity antibodies. Here we show that somatic mutations not only play a critical role in antigen binding, they also affect the thermodynamic stability of the antibody molecule. Somatic mutations directly involved in antigen recognition by antibody 93F3, which binds a relatively small hapten, reduce the melting temperature compared with its germ-line precursor by up to 9 degrees C. The destabilizing effects of these mutations are compensated by additional somatic mutations located on surface loops distal to the antigen binding site. Similarly, somatic mutations enhance both the affinity and thermodynamic stability of antibody OKT3, which binds the large protein antigen CD3. Analysis of the crystal structures of 93F3 and OKT3 indicates that these somatic mutations modulate antibody stability primarily through the interface of the heavy and light chain variable domains. The historical view of antibody maturation has been that somatic hypermutation and subsequent clonal selection increase antigen-antibody specificity and binding energy. Our results suggest that this process also optimizes protein stability, and that many peripheral mutations that were considered to be neutral are required to offset deleterious effects of mutations that increase affinity. Thus, the immunological evolution of antibodies recapitulates on a much shorter timescale the natural evolution of enzymes in which function and thermodynamic stability are simultaneously enhanced through mutation and selection.
Somatic hypermutation maintains antibody thermodynamic stability during affinity maturation.,Wang F, Sen S, Zhang Y, Ahmad I, Zhu X, Wilson IA, Smider VV, Magliery TJ, Schultz PG Proc Natl Acad Sci U S A. 2013 Feb 25. PMID:23440204[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Wang F, Sen S, Zhang Y, Ahmad I, Zhu X, Wilson IA, Smider VV, Magliery TJ, Schultz PG. Somatic hypermutation maintains antibody thermodynamic stability during affinity maturation. Proc Natl Acad Sci U S A. 2013 Feb 25. PMID:23440204 doi:10.1073/pnas.1301810110
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