4ihk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:16, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the Collagen VI alpha3 N5 domain R1061Q==
==Crystal structure of the Collagen VI alpha3 N5 domain R1061Q==
-
<StructureSection load='4ihk' size='340' side='right' caption='[[4ihk]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
+
<StructureSection load='4ihk' size='340' side='right'caption='[[4ihk]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ihk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IHK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IHK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ihk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IHK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IHK FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4igi|4igi]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Col6a3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ihk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ihk OCA], [https://pdbe.org/4ihk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ihk RCSB], [https://www.ebi.ac.uk/pdbsum/4ihk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ihk ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ihk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ihk OCA], [http://pdbe.org/4ihk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ihk RCSB], [http://www.ebi.ac.uk/pdbsum/4ihk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ihk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E9PWQ3_MOUSE E9PWQ3_MOUSE]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Von Willebrand factor A (VWA) domains are versatile protein interaction domains with N and C termini in close proximity placing spatial constraints on overall protein structure. The 1.2 A crystal structures of a collagen VI VWA domain and a disease-causing point mutant show C-terminal extensions that place the N and C termini at opposite ends. This allows a "beads-on-a-string" arrangement of multiple VWA domains as observed for ten N-terminal domains of the collagen VI alpha3 chain. The extension is linked to the core domain by a salt bridge and two hydrophobic patches. Comparison of the wild-type and a muscular dystrophy-associated mutant structure identifies a potential perturbation of a protein interaction interface and indeed, the secretion of mutant collagen VI tetramers is affected. Homology modeling is used to locate a number of disease-associated mutations and analyze their structural impact, which will allow mechanistic analysis of collagen-VI-associated muscular dystrophy phenotypes.
 +
 +
A structure of a collagen VI VWA domain displays N and C termini at opposite sides of the protein.,Becker AK, Mikolajek H, Paulsson M, Wagener R, Werner JM Structure. 2014 Feb 4;22(2):199-208. doi: 10.1016/j.str.2013.06.028. Epub 2013, Dec 12. PMID:24332716<ref>PMID:24332716</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4ihk" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Collagen|Collagen]]
+
*[[Collagen 3D structures|Collagen 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Becker, A K.A]]
+
[[Category: Mus musculus]]
-
[[Category: Mikolajek, H]]
+
[[Category: Becker AKA]]
-
[[Category: Paulsson, M]]
+
[[Category: Mikolajek H]]
-
[[Category: Wagener, R]]
+
[[Category: Paulsson M]]
-
[[Category: Werner, J M]]
+
[[Category: Wagener R]]
-
[[Category: Cell adhesion]]
+
[[Category: Werner JM]]
-
[[Category: Collagen vi 3n5]]
+
-
[[Category: Vwa]]
+

Current revision

Crystal structure of the Collagen VI alpha3 N5 domain R1061Q

PDB ID 4ihk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools