This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2wkh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:00, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the acyl-enzyme OXA-10 K70C-Ampicillin at pH 7==
==Crystal structure of the acyl-enzyme OXA-10 K70C-Ampicillin at pH 7==
-
<StructureSection load='2wkh' size='340' side='right' caption='[[2wkh]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
+
<StructureSection load='2wkh' size='340' side='right'caption='[[2wkh]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2wkh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WKH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2wkh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WKH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZZ7:(2R,4S)-2-[(R)-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}(CARBOXY)METHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC+ACID'>ZZ7</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.791&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1k55|1k55]], [[1k56|1k56]], [[1e3u|1e3u]], [[1fof|1fof]], [[2wgv|2wgv]], [[2wgi|2wgi]], [[1e4d|1e4d]], [[2wki|2wki]], [[1k4f|1k4f]], [[1ewz|1ewz]], [[2wgw|2wgw]], [[1k6s|1k6s]], [[1k4e|1k4e]], [[1k57|1k57]], [[1k54|1k54]], [[1k6r|1k6r]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZZ7:(2R,4S)-2-[(R)-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}(CARBOXY)METHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC+ACID'>ZZ7</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wkh OCA], [https://pdbe.org/2wkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wkh RCSB], [https://www.ebi.ac.uk/pdbsum/2wkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wkh ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wkh OCA], [http://pdbe.org/2wkh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wkh RCSB], [http://www.ebi.ac.uk/pdbsum/2wkh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wkh ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BLO10_PSEAI BLO10_PSEAI]] Hydrolyzes both carbenicillin and oxacillin.
+
[https://www.uniprot.org/uniprot/BLO10_PSEAI BLO10_PSEAI] Hydrolyzes both carbenicillin and oxacillin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/2wkh_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/2wkh_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 31:
==See Also==
==See Also==
-
*[[Beta-lactamase|Beta-lactamase]]
+
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-lactamase]]
+
[[Category: Large Structures]]
-
[[Category: Bauvois, C]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Charlier, P]]
+
[[Category: Bauvois C]]
-
[[Category: Galleni, M]]
+
[[Category: Charlier P]]
-
[[Category: Guiet, R]]
+
[[Category: Galleni M]]
-
[[Category: Kerff, F]]
+
[[Category: Guiet R]]
-
[[Category: Sauvage, E]]
+
[[Category: Kerff F]]
-
[[Category: Vercheval, L]]
+
[[Category: Sauvage E]]
-
[[Category: Antibiotic resistance]]
+
[[Category: Vercheval L]]
-
[[Category: Class d beta-lactamase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Plasmid encoded]]
+

Current revision

Crystal structure of the acyl-enzyme OXA-10 K70C-Ampicillin at pH 7

PDB ID 2wkh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools