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| | ==Crystal Structure of Nicotiana tabacum malonyltransferase (NtMat1) complexed with malonyl-coa== | | ==Crystal Structure of Nicotiana tabacum malonyltransferase (NtMat1) complexed with malonyl-coa== |
| - | <StructureSection load='2xr7' size='340' side='right' caption='[[2xr7]], [[Resolution|resolution]] 3.10Å' scene=''> | + | <StructureSection load='2xr7' size='340' side='right'caption='[[2xr7]], [[Resolution|resolution]] 3.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2xr7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nicotiana_tabacum Nicotiana tabacum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XR7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XR7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2xr7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_tabacum Nicotiana tabacum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XR7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLC:MALONYL-COENZYME+A'>MLC</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLC:MALONYL-COENZYME+A'>MLC</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xr7 OCA], [http://pdbe.org/2xr7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xr7 RCSB], [http://www.ebi.ac.uk/pdbsum/2xr7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xr7 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xr7 OCA], [https://pdbe.org/2xr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xr7 RCSB], [https://www.ebi.ac.uk/pdbsum/2xr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xr7 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/MAT1_TOBAC MAT1_TOBAC] Malonyltransferase with broad substrate specificity acting on phenolic glucosides including xenobiotic naphthols. Has activity against flavonoid 7-O-glucosides, flavonoid 3-O-glucosides and naphthol glucosides, and to a lesser extent against coumarin glucosides in vitro. Prefers malonyl-CoA as an acyl donor, but also active with succinyl-CoA and methylmalonyl-CoA, but not with acetyl-CoA.<ref>PMID:15860007</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Large Structures]] |
| | [[Category: Nicotiana tabacum]] | | [[Category: Nicotiana tabacum]] |
| - | [[Category: Chance, M R]] | + | [[Category: Chance MR]] |
| - | [[Category: Liu, C J]] | + | [[Category: Liu CJ]] |
| - | [[Category: Manjasetty, B A]] | + | [[Category: Manjasetty BA]] |
| - | [[Category: Panjikar, S]] | + | [[Category: Panjikar S]] |
| - | [[Category: Taguchi, G]] | + | [[Category: Taguchi G]] |
| - | [[Category: Yu, X H]] | + | [[Category: Yu XH]] |
| - | [[Category: Naphthol]]
| + | |
| - | [[Category: Transferase]]
| + | |
| - | [[Category: Xenobiotic]]
| + | |
| Structural highlights
Function
MAT1_TOBAC Malonyltransferase with broad substrate specificity acting on phenolic glucosides including xenobiotic naphthols. Has activity against flavonoid 7-O-glucosides, flavonoid 3-O-glucosides and naphthol glucosides, and to a lesser extent against coumarin glucosides in vitro. Prefers malonyl-CoA as an acyl donor, but also active with succinyl-CoA and methylmalonyl-CoA, but not with acetyl-CoA.[1]
Publication Abstract from PubMed
Plant HXXXD acyltransferase-catalyzed malonylation is an important modification reaction in elaborating the structural diversity of flavonoids and anthocyanins, and a universal adaptive mechanism to detoxify xenobiotics. Nicotiana tabacum malonyltransferase 1 (NtMaT1) is a member of anthocyanin acyltransferase subfamily that uses malonyl-CoA (MLC) as donor catalyzing transacylation in a range of flavonoid and naphthol glucosides. To gain insights into the molecular basis underlying its catalytic mechanism and versatile substrate specificity, we resolved the X-ray crystal structure of NtMaT1 to 3.1 A resolution. The structure comprises two alpha/beta mixed subdomains, as typically found in the HXXXD acyltransferases. The partial electron density map of malonyl-CoA allowed us to reliably dock the entire molecule into the solvent channel and subsequently define the binding sites for both donor and acceptor substrates. MLC bound to the NtMaT1 occupies one end of the long solvent channel between two subdomains. On superimposing and comparing the structure of NtMaT1 with that of an enzyme from anthocyanin acyltransferase subfamily from red chrysanthemum (Dm3Mat3) revealed large architectural variation in the binding sites, both for the acyl donor and for the acceptor, although their overall protein folds are structurally conserved. Consequently, the shape and the interactions of malonyl-CoA with the binding sites' amino acid residues differ substantially. These major local architectural disparities point to the independent, divergent evolution of plant HXXXD acyltransferases in different species. The structural flexibility of the enzyme and the amendable binding pattern of the substrates provide a basis for the evolution of the distinct, versatile substrate specificity of plant HXXXD acyltransferases.
Structural basis for modification of flavonol and naphthol glucoconjugates by Nicotiana tabacum malonyltransferase (NtMaT1).,Manjasetty BA, Yu XH, Panjikar S, Taguchi G, Chance MR, Liu CJ Planta. 2012 May 19. PMID:22610270[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Taguchi G, Shitchi Y, Shirasawa S, Yamamoto H, Hayashida N. Molecular cloning, characterization, and downregulation of an acyltransferase that catalyzes the malonylation of flavonoid and naphthol glucosides in tobacco cells. Plant J. 2005 May;42(4):481-91. PMID:15860007 doi:10.1111/j.1365-313X.2005.02387.x
- ↑ Manjasetty BA, Yu XH, Panjikar S, Taguchi G, Chance MR, Liu CJ. Structural basis for modification of flavonol and naphthol glucoconjugates by Nicotiana tabacum malonyltransferase (NtMaT1). Planta. 2012 May 19. PMID:22610270 doi:10.1007/s00425-012-1660-8
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