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- | {{Large structure}}
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| ==ClpP1 from Listeria monocytogenes== | | ==ClpP1 from Listeria monocytogenes== |
- | <StructureSection load='4jcq' size='340' side='right' caption='[[4jcq]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='4jcq' size='340' side='right'caption='[[4jcq]], [[Resolution|resolution]] 2.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4jcq]] is a 28 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JCQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4jcq]] is a 28 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JCQ FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3v5e|3v5e]], [[2fzs|2fzs]], [[1tyf|1tyf]], [[4jcr|4jcr]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">clpP, lmo1138 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=169963 LISMO])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jcq OCA], [https://pdbe.org/4jcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jcq RCSB], [https://www.ebi.ac.uk/pdbsum/4jcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jcq ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endopeptidase_Clp Endopeptidase Clp], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.92 3.4.21.92] </span></td></tr>
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jcq OCA], [http://pdbe.org/4jcq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jcq RCSB], [http://www.ebi.ac.uk/pdbsum/4jcq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jcq ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
- | {{Large structure}} | |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/Q8Y7Y1_LISMO Q8Y7Y1_LISMO]] Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity).[HAMAP-Rule:MF_00444] | + | [https://www.uniprot.org/uniprot/Q8Y7Y1_LISMO Q8Y7Y1_LISMO] Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity).[HAMAP-Rule:MF_00444] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Clp Protease|Clp Protease]] | + | *[[Clp protease 3D structures|Clp protease 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Endopeptidase Clp]] | + | [[Category: Large Structures]] |
- | [[Category: Lismo]] | + | [[Category: Listeria monocytogenes EGD-e]] |
- | [[Category: Alte, F]] | + | [[Category: Alte F]] |
- | [[Category: Gersch, M]] | + | [[Category: Gersch M]] |
- | [[Category: Groll, M]] | + | [[Category: Groll M]] |
- | [[Category: List, A]] | + | [[Category: List A]] |
- | [[Category: Sieber, S]] | + | [[Category: Sieber S]] |
- | [[Category: Wachtel, R]] | + | [[Category: Wachtel R]] |
- | [[Category: Zeiler, E]] | + | [[Category: Zeiler E]] |
- | [[Category: Clp protease family]]
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- | [[Category: Hydrolase]]
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- | [[Category: Inactive catalytic triad]]
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- | [[Category: Pathogenic bacteria]]
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- | [[Category: Regulation]]
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- | [[Category: Virulence factor]]
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| Structural highlights
Function
Q8Y7Y1_LISMO Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity).[HAMAP-Rule:MF_00444]
Publication Abstract from PubMed
Caseinolytic proteases (ClpPs) are large oligomeric protein complexes that contribute to cell homeostasis as well as virulence regulation in bacteria. Although most organisms possess a single ClpP protein, some organisms encode two or more ClpP isoforms. Here, we elucidated the crystal structures of ClpP1 and ClpP2 from pathogenic Listeria monocytogenes and observe an unprecedented regulation principle by the catalytic triad. Whereas L. monocytogenes (Lm)ClpP2 is both structurally and functionally similar to previously studied tetradecameric ClpP proteins from Escherichia coli and Staphylococcus aureus, heptameric LmClpP1 features an asparagine in its catalytic triad. Mutation of this asparagine to aspartate increased the reactivity of the active site and led to the assembly of a tetradecameric complex. We analyzed the heterooligomeric complex of LmClpP1 and LmClpP2 via coexpression and subsequent labeling studies with natural product-derived probes. Notably, the LmClpP1 peptidase activity is stimulated 75-fold in the complex providing insights into heterooligomerization as a regulatory mechanism. Collectively, our data point toward different preferences for substrates and inhibitors of the two ClpP enzymes and highlight their structural and functional characteristics.
Structural and functional insights into caseinolytic proteases reveal an unprecedented regulation principle of their catalytic triad.,Zeiler E, List A, Alte F, Gersch M, Wachtel R, Poreba M, Drag M, Groll M, Sieber SA Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11302-7. doi:, 10.1073/pnas.1219125110. Epub 2013 Jun 24. PMID:23798410[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Zeiler E, List A, Alte F, Gersch M, Wachtel R, Poreba M, Drag M, Groll M, Sieber SA. Structural and functional insights into caseinolytic proteases reveal an unprecedented regulation principle of their catalytic triad. Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11302-7. doi:, 10.1073/pnas.1219125110. Epub 2013 Jun 24. PMID:23798410 doi:10.1073/pnas.1219125110
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